miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 48094 0.73 0.149513
Target:  5'- aGGCgcaGGCGGCAacCGggCGCGCgcaccgCGCCGGc -3'
miRNA:   3'- -CCG---CCGCCGU--GCuaGCGCGa-----GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 47990 0.72 0.194494
Target:  5'- cGGCGG-GcGCACGGgcaguggacUCGCGCcaggCGCCGAu -3'
miRNA:   3'- -CCGCCgC-CGUGCU---------AGCGCGa---GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 47718 0.75 0.10238
Target:  5'- gGGCGGCGGCACaaacgccgugaaGAUUGCGUUCcgcacuGCCGc -3'
miRNA:   3'- -CCGCCGCCGUG------------CUAGCGCGAG------UGGCu -5'
16992 5' -60.4 NC_004333.2 + 47688 0.66 0.429895
Target:  5'- cGGCaaGGCGaaGUACGAcgaagcguUCaCGCUCGCCGGc -3'
miRNA:   3'- -CCG--CCGC--CGUGCU--------AGcGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 47484 1.1 0.000255
Target:  5'- gGGCGGCGGCACGAUCGCGCUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUAGCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 45429 0.69 0.305169
Target:  5'- cGGCGGCGGCgACGG-CGCaUUCG-CGAg -3'
miRNA:   3'- -CCGCCGCCG-UGCUaGCGcGAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 44968 0.75 0.108136
Target:  5'- gGGCgGGCGGCGCGccgggcCG-GCUCACCGGc -3'
miRNA:   3'- -CCG-CCGCCGUGCua----GCgCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 44692 0.69 0.290799
Target:  5'- aGCGGCacaGGCGauggaggacuUGAagGCGUUCGCCGAg -3'
miRNA:   3'- cCGCCG---CCGU----------GCUagCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 44391 0.73 0.145576
Target:  5'- cGGCGGCGcguGCGCGGUacaacggccugcCGgGCUCGCUGGc -3'
miRNA:   3'- -CCGCCGC---CGUGCUA------------GCgCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 43372 0.67 0.368028
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 43315 0.73 0.157679
Target:  5'- cGGCGGCagcggcaucGGCACGGcgCGCGCguacggucaGCCGAc -3'
miRNA:   3'- -CCGCCG---------CCGUGCUa-GCGCGag-------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 43275 0.66 0.439222
Target:  5'- gGGCGcaaGgGGCGcCGAUCccggccggcuauGCGCUCguGCCGAu -3'
miRNA:   3'- -CCGC---CgCCGU-GCUAG------------CGCGAG--UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 42978 0.67 0.376485
Target:  5'- cGcCGGCGGacgaGCGggCgGCGCUCucgACCGAu -3'
miRNA:   3'- cC-GCCGCCg---UGCuaG-CGCGAG---UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 42845 0.72 0.193488
Target:  5'- cGGCGGCGugacgauccaGCGCGAagGCGCgaaagacccgaaCGCCGAg -3'
miRNA:   3'- -CCGCCGC----------CGUGCUagCGCGa-----------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 42024 0.79 0.060429
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 41833 0.66 0.408893
Target:  5'- cGGCGcaucguaaaaucgcGCGGUGCGGUCGUcCUCACgGc -3'
miRNA:   3'- -CCGC--------------CGCCGUGCUAGCGcGAGUGgCu -5'
16992 5' -60.4 NC_004333.2 + 41715 0.73 0.160631
Target:  5'- gGGCGGCacGGCGCGAUCaacgaggagaucgGCGCgggcgacucgcgCGCCGGg -3'
miRNA:   3'- -CCGCCG--CCGUGCUAG-------------CGCGa-----------GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 41597 0.7 0.244683
Target:  5'- cGUGGCGGCgauGCGGgcuuUCGCGCguacgcgCGCCGc -3'
miRNA:   3'- cCGCCGCCG---UGCU----AGCGCGa------GUGGCu -5'
16992 5' -60.4 NC_004333.2 + 41508 0.66 0.420685
Target:  5'- cGGCGGauGCGCGccugcUCGaGCgCGCCGAg -3'
miRNA:   3'- -CCGCCgcCGUGCu----AGCgCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 41037 0.69 0.290094
Target:  5'- -aCGGCGcGCACGAucgucgacacguuUCGCGC-CGCCa- -3'
miRNA:   3'- ccGCCGC-CGUGCU-------------AGCGCGaGUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.