miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 15285 0.82 0.033096
Target:  5'- uGCGGCGGCGCGGUCagcaucagcaccggGCGCUUGCCGu -3'
miRNA:   3'- cCGCCGCCGUGCUAG--------------CGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 39330 0.72 0.194494
Target:  5'- cGGCGGCGGCGCGcuucuaCGaCGCaccgcaggcauUCAUCGAc -3'
miRNA:   3'- -CCGCCGCCGUGCua----GC-GCG-----------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 3311 0.71 0.217803
Target:  5'- cGCGGCGGCGCGcgguugaauuaaacuAUCGC-UUCGCgCGAu -3'
miRNA:   3'- cCGCCGCCGUGC---------------UAGCGcGAGUG-GCU- -5'
16992 5' -60.4 NC_004333.2 + 39676 0.66 0.458217
Target:  5'- aGGCGGCGcGCuuccUGGUCggccugccuGCGC-CACUGAc -3'
miRNA:   3'- -CCGCCGC-CGu---GCUAG---------CGCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11106 0.74 0.123548
Target:  5'- cGCGacgaacaGCGGCACGAaaUCGC-CUCGCCGGg -3'
miRNA:   3'- cCGC-------CGCCGUGCU--AGCGcGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 19628 0.74 0.137985
Target:  5'- cGCGGCGaGCGCGGcCGaCGCUgGCCGu -3'
miRNA:   3'- cCGCCGC-CGUGCUaGC-GCGAgUGGCu -5'
16992 5' -60.4 NC_004333.2 + 39270 0.73 0.145576
Target:  5'- aGGCGcacGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 44391 0.73 0.145576
Target:  5'- cGGCGGCGcguGCGCGGUacaacggccugcCGgGCUCGCUGGc -3'
miRNA:   3'- -CCGCCGC---CGUGCUA------------GCgCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 28867 0.73 0.158938
Target:  5'- cGGCGcgcucaagcgcucguGCcGCGCGAUCGCGCUCggcgcagGCCGGc -3'
miRNA:   3'- -CCGC---------------CGcCGUGCUAGCGCGAG-------UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11344 0.72 0.19149
Target:  5'- --aGGCGGCGCGGUucgucgucaccuugcCGCGCUCGaCGAg -3'
miRNA:   3'- ccgCCGCCGUGCUA---------------GCGCGAGUgGCU- -5'
16992 5' -60.4 NC_004333.2 + 25128 0.73 0.161911
Target:  5'- cGGCGGCGcGCACGuUCGCgGCcugC-CCGAu -3'
miRNA:   3'- -CCGCCGC-CGUGCuAGCG-CGa--GuGGCU- -5'
16992 5' -60.4 NC_004333.2 + 691 0.73 0.149513
Target:  5'- -uCGGUGaGCGCGAUCGUGC-CGCCGc -3'
miRNA:   3'- ccGCCGC-CGUGCUAGCGCGaGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 42024 0.79 0.060429
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 20228 0.73 0.16234
Target:  5'- uGGCGGCgaucgaccgcgacuGGCcuACGAUCGCGCcgcacaucgacuccuUCAUCGAa -3'
miRNA:   3'- -CCGCCG--------------CCG--UGCUAGCGCG---------------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 13970 0.77 0.073485
Target:  5'- aGGCGGCGGC-CGGUgCGCGCgagCugCGc -3'
miRNA:   3'- -CCGCCGCCGuGCUA-GCGCGa--GugGCu -5'
16992 5' -60.4 NC_004333.2 + 48094 0.73 0.149513
Target:  5'- aGGCgcaGGCGGCAacCGggCGCGCgcaccgCGCCGGc -3'
miRNA:   3'- -CCG---CCGCCGU--GCuaGCGCGa-----GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 40728 0.72 0.170235
Target:  5'- cGGCGGCGGCAa-GUCGCuccugaacgcgauGCUgAUCGAg -3'
miRNA:   3'- -CCGCCGCCGUgcUAGCG-------------CGAgUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 9007 0.71 0.2096
Target:  5'- cGGCGuucGCGGCuugccagGCGG-CGCGCUCGCUGc -3'
miRNA:   3'- -CCGC---CGCCG-------UGCUaGCGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 28784 0.76 0.09325
Target:  5'- cGCGGCGGCGCGAcuucccaUCGCGUauagugcguccacgUCgACCGAu -3'
miRNA:   3'- cCGCCGCCGUGCU-------AGCGCG--------------AG-UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 10646 0.73 0.145576
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.