miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 17871 0.68 0.35151
Target:  5'- gGGUGGUgucgcaGGCGCGAcggCGgccaGCUCGCCGu -3'
miRNA:   3'- -CCGCCG------CCGUGCUa--GCg---CGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 23010 0.67 0.402629
Target:  5'- cGCGGCGGCagGCGAgCGUGUcgAUCGGa -3'
miRNA:   3'- cCGCCGCCG--UGCUaGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 33183 0.67 0.393787
Target:  5'- cGGCGGCccgcuaaccGGCuucuCGAUCGaCGUcgguaUCAUCGAc -3'
miRNA:   3'- -CCGCCG---------CCGu---GCUAGC-GCG-----AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 35802 0.67 0.376485
Target:  5'- gGGCGG-GGCGCGggCGgGCgcuacggCGCCc- -3'
miRNA:   3'- -CCGCCgCCGUGCuaGCgCGa------GUGGcu -5'
16992 5' -60.4 NC_004333.2 + 4724 0.67 0.375633
Target:  5'- uGCGGCGcgcaagcGCGCGAUgCGCGCguccgUCAgcCCGAc -3'
miRNA:   3'- cCGCCGC-------CGUGCUA-GCGCG-----AGU--GGCU- -5'
16992 5' -60.4 NC_004333.2 + 3123 0.67 0.368028
Target:  5'- cGCGGCcGCGCGGUguucagcguuugCGCGC-CGCCa- -3'
miRNA:   3'- cCGCCGcCGUGCUA------------GCGCGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 43372 0.67 0.368028
Target:  5'- gGGCGGCGuaugagcgucaCGCGAcgCGgGCUCACCc- -3'
miRNA:   3'- -CCGCCGCc----------GUGCUa-GCgCGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 35873 0.67 0.368028
Target:  5'- aGGCuGGCGcGCAgGAcgccgcaaugCGCGC-CGCCGGu -3'
miRNA:   3'- -CCG-CCGC-CGUgCUa---------GCGCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 22656 0.68 0.35151
Target:  5'- aGCGGCGcGUACcaaGA-CGCGCUCgGCCGc -3'
miRNA:   3'- cCGCCGC-CGUG---CUaGCGCGAG-UGGCu -5'
16992 5' -60.4 NC_004333.2 + 41833 0.66 0.408893
Target:  5'- cGGCGcaucguaaaaucgcGCGGUGCGGUCGUcCUCACgGc -3'
miRNA:   3'- -CCGC--------------CGCCGUGCUAGCGcGAGUGgCu -5'
16992 5' -60.4 NC_004333.2 + 24045 0.66 0.411596
Target:  5'- --aGGCGGcCGCGAacaUUGCGCgCugCGAc -3'
miRNA:   3'- ccgCCGCC-GUGCU---AGCGCGaGugGCU- -5'
16992 5' -60.4 NC_004333.2 + 21007 0.66 0.411596
Target:  5'- -uCGGgGGCACgcauggcuGAUCGCGC--GCCGAc -3'
miRNA:   3'- ccGCCgCCGUG--------CUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 19200 0.66 0.448664
Target:  5'- cGGCGGCcGCGCaacuGAUcgcCGCGUUCgACCGc -3'
miRNA:   3'- -CCGCCGcCGUG----CUA---GCGCGAG-UGGCu -5'
16992 5' -60.4 NC_004333.2 + 15767 0.66 0.448664
Target:  5'- aGCGaGCuGCGCGAg-GCGCggGCCGAc -3'
miRNA:   3'- cCGC-CGcCGUGCUagCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 21547 0.66 0.448664
Target:  5'- aGCGGCGGUgcgacaACGAUCaaCGC-CGCCa- -3'
miRNA:   3'- cCGCCGCCG------UGCUAGc-GCGaGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 981 0.66 0.433612
Target:  5'- cGCGGCGacuugugccucugcuGCGCGGcagCGCGUUCuuCCGGc -3'
miRNA:   3'- cCGCCGC---------------CGUGCUa--GCGCGAGu-GGCU- -5'
16992 5' -60.4 NC_004333.2 + 12225 0.66 0.429895
Target:  5'- -aCGGCuugaauGCGCaGAUCGCGCUCAUgaCGAc -3'
miRNA:   3'- ccGCCGc-----CGUG-CUAGCGCGAGUG--GCU- -5'
16992 5' -60.4 NC_004333.2 + 41508 0.66 0.420685
Target:  5'- cGGCGGauGCGCGccugcUCGaGCgCGCCGAg -3'
miRNA:   3'- -CCGCCgcCGUGCu----AGCgCGaGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 27442 0.66 0.420685
Target:  5'- cGGCGaugucCGGCAgCGcgCGCGCcgucaUCACCGc -3'
miRNA:   3'- -CCGCc----GCCGU-GCuaGCGCG-----AGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 20044 0.66 0.411596
Target:  5'- cGGCGGCGcgcaGUACGGaaaCGCGCgCGuuGAg -3'
miRNA:   3'- -CCGCCGC----CGUGCUa--GCGCGaGUggCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.