miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16992 5' -60.4 NC_004333.2 + 47484 1.1 0.000255
Target:  5'- gGGCGGCGGCACGAUCGCGCUCACCGAg -3'
miRNA:   3'- -CCGCCGCCGUGCUAGCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 27674 0.83 0.030648
Target:  5'- cGGCGGCGGCcggcaGCGGUUGCGCggcagcCGCCGGg -3'
miRNA:   3'- -CCGCCGCCG-----UGCUAGCGCGa-----GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 15285 0.82 0.033096
Target:  5'- uGCGGCGGCGCGGUCagcaucagcaccggGCGCUUGCCGu -3'
miRNA:   3'- cCGCCGCCGUGCUAG--------------CGCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 18284 0.8 0.044329
Target:  5'- cGCGcGCGGCcCGAUCGCGCagcgcuUCGCCGAc -3'
miRNA:   3'- cCGC-CGCCGuGCUAGCGCG------AGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 42024 0.79 0.060429
Target:  5'- aGCGcGCGGCcaACGAgcggggCGUGCUCGCCGAa -3'
miRNA:   3'- cCGC-CGCCG--UGCUa-----GCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 13970 0.77 0.073485
Target:  5'- aGGCGGCGGC-CGGUgCGCGCgagCugCGc -3'
miRNA:   3'- -CCGCCGCCGuGCUA-GCGCGa--GugGCu -5'
16992 5' -60.4 NC_004333.2 + 9880 0.77 0.084428
Target:  5'- cGCcGCGuGCACGGUCGCGCgugCAUCGAu -3'
miRNA:   3'- cCGcCGC-CGUGCUAGCGCGa--GUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 28784 0.76 0.09325
Target:  5'- cGCGGCGGCGCGAcuucccaUCGCGUauagugcguccacgUCgACCGAu -3'
miRNA:   3'- cCGCCGCCGUGCU-------AGCGCG--------------AG-UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 47718 0.75 0.10238
Target:  5'- gGGCGGCGGCACaaacgccgugaaGAUUGCGUUCcgcacuGCCGc -3'
miRNA:   3'- -CCGCCGCCGUG------------CUAGCGCGAG------UGGCu -5'
16992 5' -60.4 NC_004333.2 + 44968 0.75 0.108136
Target:  5'- gGGCgGGCGGCGCGccgggcCG-GCUCACCGGc -3'
miRNA:   3'- -CCG-CCGCCGUGCua----GCgCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 18178 0.75 0.120572
Target:  5'- aGCGGCGccGCAUGGugcUCGCGCUCggcGCCGGu -3'
miRNA:   3'- cCGCCGC--CGUGCU---AGCGCGAG---UGGCU- -5'
16992 5' -60.4 NC_004333.2 + 11106 0.74 0.123548
Target:  5'- cGCGacgaacaGCGGCACGAaaUCGC-CUCGCCGGg -3'
miRNA:   3'- cCGC-------CGCCGUGCU--AGCGcGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 1094 0.74 0.127278
Target:  5'- cGGa-GCGGCGCGAaagaUCGCGCUCACg-- -3'
miRNA:   3'- -CCgcCGCCGUGCU----AGCGCGAGUGgcu -5'
16992 5' -60.4 NC_004333.2 + 22754 0.74 0.130758
Target:  5'- cGGCGugacggccgccGcCGGCACGcugcaggCGCGCUCGCCGGa -3'
miRNA:   3'- -CCGC-----------C-GCCGUGCua-----GCGCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 39478 0.74 0.137985
Target:  5'- aGCGGCGuCACGGUCGgcaCGUUCGCCGu -3'
miRNA:   3'- cCGCCGCcGUGCUAGC---GCGAGUGGCu -5'
16992 5' -60.4 NC_004333.2 + 19628 0.74 0.137985
Target:  5'- cGCGGCGaGCGCGGcCGaCGCUgGCCGu -3'
miRNA:   3'- cCGCCGC-CGUGCUaGC-GCGAgUGGCu -5'
16992 5' -60.4 NC_004333.2 + 39270 0.73 0.145576
Target:  5'- aGGCGcacGCGcGCGCGAUCGCagguuggcuGCUCACCc- -3'
miRNA:   3'- -CCGC---CGC-CGUGCUAGCG---------CGAGUGGcu -5'
16992 5' -60.4 NC_004333.2 + 10646 0.73 0.145576
Target:  5'- uGGCGGCGaagaaaggugacGuCACGGUCGCGCcgGCCGGu -3'
miRNA:   3'- -CCGCCGC------------C-GUGCUAGCGCGagUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 44391 0.73 0.145576
Target:  5'- cGGCGGCGcguGCGCGGUacaacggccugcCGgGCUCGCUGGc -3'
miRNA:   3'- -CCGCCGC---CGUGCUA------------GCgCGAGUGGCU- -5'
16992 5' -60.4 NC_004333.2 + 15427 0.73 0.149513
Target:  5'- uGGcCGGCGGCAgCGAccugCGCgugacguucuGCUCGCCGGc -3'
miRNA:   3'- -CC-GCCGCCGU-GCUa---GCG----------CGAGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.