Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16993 | 3' | -50.3 | NC_004333.2 | + | 47222 | 1.09 | 0.002384 |
Target: 5'- cUGCCGGCAUUGCAUUCCAUGCAAACGc -3' miRNA: 3'- -ACGGCCGUAACGUAAGGUACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 46246 | 0.68 | 0.786269 |
Target: 5'- cGCCGGU---GCGggCCAgcuggUGCAGACGc -3' miRNA: 3'- aCGGCCGuaaCGUaaGGU-----ACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 45520 | 0.8 | 0.199752 |
Target: 5'- cUGCCGGCGUUGCGgcugauacgCCG-GCAAGCGc -3' miRNA: 3'- -ACGGCCGUAACGUaa-------GGUaCGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 45190 | 0.72 | 0.593367 |
Target: 5'- cGCCGGCGagcgucuacgGCAUUCCGuUGaCGGGCGu -3' miRNA: 3'- aCGGCCGUaa--------CGUAAGGU-AC-GUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 43582 | 0.72 | 0.558755 |
Target: 5'- cUGCCGGCGcgGCcgUUCAUGgaaaAGACGa -3' miRNA: 3'- -ACGGCCGUaaCGuaAGGUACg---UUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 39389 | 0.67 | 0.826538 |
Target: 5'- cGCCGGCGcaagGCAUUgCcgGCGAc-- -3' miRNA: 3'- aCGGCCGUaa--CGUAAgGuaCGUUugc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 35489 | 0.71 | 0.651638 |
Target: 5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3' miRNA: 3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 35177 | 0.67 | 0.854372 |
Target: 5'- cGCCGGCAgUUGCAUaaCC-UGC--GCGa -3' miRNA: 3'- aCGGCCGU-AACGUAa-GGuACGuuUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 32983 | 0.74 | 0.469946 |
Target: 5'- cUGCCGGCcgUGCGgau--UGCGAACGc -3' miRNA: 3'- -ACGGCCGuaACGUaagguACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 30695 | 0.67 | 0.854372 |
Target: 5'- cGCCGGCGgcgGCAacuucgUCCuggaagcugGCAAGCu -3' miRNA: 3'- aCGGCCGUaa-CGUa-----AGGua-------CGUUUGc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 29122 | 0.66 | 0.895427 |
Target: 5'- aGCCGGCGgacggucaGCAUccgCCAUcGCAucGGCGu -3' miRNA: 3'- aCGGCCGUaa------CGUAa--GGUA-CGU--UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28950 | 0.66 | 0.879857 |
Target: 5'- aGCCcGUAUUGCucgagcgCCGUGCGgAACGc -3' miRNA: 3'- aCGGcCGUAACGuaa----GGUACGU-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28910 | 0.75 | 0.388902 |
Target: 5'- gGCCGGCGcauacUUGCcgUCgGUGCGuAGCGg -3' miRNA: 3'- aCGGCCGU-----AACGuaAGgUACGU-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28534 | 0.69 | 0.720736 |
Target: 5'- cGCCGacGCG-UGCAUUCCcgGCAucgcACGu -3' miRNA: 3'- aCGGC--CGUaACGUAAGGuaCGUu---UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 24524 | 0.68 | 0.796638 |
Target: 5'- gGCCGGCg--GCGUUCCGccucaagGCGAGg- -3' miRNA: 3'- aCGGCCGuaaCGUAAGGUa------CGUUUgc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 22938 | 0.67 | 0.826538 |
Target: 5'- gGCUGGCucgGCAUUUCAaccCGAACGg -3' miRNA: 3'- aCGGCCGuaaCGUAAGGUac-GUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 22466 | 0.68 | 0.806815 |
Target: 5'- gGCCGGCGa-GCAagCCAUucucGCGGGCGu -3' miRNA: 3'- aCGGCCGUaaCGUaaGGUA----CGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 22241 | 0.67 | 0.845342 |
Target: 5'- cGCCGGCAUcgacgccgcgcGCAauagcuaCGUGCAAGCGc -3' miRNA: 3'- aCGGCCGUAa----------CGUaag----GUACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 21475 | 0.69 | 0.754132 |
Target: 5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3' miRNA: 3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 20323 | 0.71 | 0.651638 |
Target: 5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3' miRNA: 3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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