Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16993 | 3' | -50.3 | NC_004333.2 | + | 2673 | 0.69 | 0.731985 |
Target: 5'- cGCCGGCAgcUUGCAgcgUCGcGCcGGCGg -3' miRNA: 3'- aCGGCCGU--AACGUaa-GGUaCGuUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 5391 | 0.67 | 0.863141 |
Target: 5'- aGCCGGCGUUgaccuguucGCGUUCUucUGCcaucGCGg -3' miRNA: 3'- aCGGCCGUAA---------CGUAAGGu-ACGuu--UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 29122 | 0.66 | 0.895427 |
Target: 5'- aGCCGGCGgacggucaGCAUccgCCAUcGCAucGGCGu -3' miRNA: 3'- aCGGCCGUaa------CGUAa--GGUA-CGU--UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 5205 | 0.66 | 0.909804 |
Target: 5'- gGCgCGGCGUcgGCA--CCGUcGCAAACu -3' miRNA: 3'- aCG-GCCGUAa-CGUaaGGUA-CGUUUGc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 28910 | 0.75 | 0.388902 |
Target: 5'- gGCCGGCGcauacUUGCcgUCgGUGCGuAGCGg -3' miRNA: 3'- aCGGCCGU-----AACGuaAGgUACGU-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 10676 | 0.74 | 0.459335 |
Target: 5'- cGCCGGCcggUGCAcgCUAUGCAcuCGg -3' miRNA: 3'- aCGGCCGua-ACGUaaGGUACGUuuGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 18175 | 0.71 | 0.651638 |
Target: 5'- uUGCCGGCGUgccgggugaUGCGcucgUCGUGCGcGCGg -3' miRNA: 3'- -ACGGCCGUA---------ACGUaa--GGUACGUuUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 20323 | 0.71 | 0.651638 |
Target: 5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3' miRNA: 3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 35489 | 0.71 | 0.651638 |
Target: 5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3' miRNA: 3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 35177 | 0.67 | 0.854372 |
Target: 5'- cGCCGGCAgUUGCAUaaCC-UGC--GCGa -3' miRNA: 3'- aCGGCCGU-AACGUAa-GGuACGuuUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 7572 | 0.67 | 0.836061 |
Target: 5'- gGUCGGCg--GCAgacCCAUGCGcagGACGu -3' miRNA: 3'- aCGGCCGuaaCGUaa-GGUACGU---UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 18841 | 0.68 | 0.775719 |
Target: 5'- cGCgCGGCAguacGCAguugCCGUGCGcAACGc -3' miRNA: 3'- aCG-GCCGUaa--CGUaa--GGUACGU-UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 15209 | 0.69 | 0.731985 |
Target: 5'- gGCCGGCA--GCAggCCGguCAGACGg -3' miRNA: 3'- aCGGCCGUaaCGUaaGGUacGUUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 9602 | 0.67 | 0.853481 |
Target: 5'- aGCCGGCGcgGCAUcggCCGguugcgcaccggcUGCcGGCGg -3' miRNA: 3'- aCGGCCGUaaCGUAa--GGU-------------ACGuUUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 12502 | 0.69 | 0.754132 |
Target: 5'- uUGCCGGCAUacggGCcgUCCG-GCu--CGg -3' miRNA: 3'- -ACGGCCGUAa---CGuaAGGUaCGuuuGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 18560 | 0.69 | 0.766081 |
Target: 5'- aGCCGGCGcgGCGgcgaauccgaacccgUUCGUGCAacaAACGa -3' miRNA: 3'- aCGGCCGUaaCGUa--------------AGGUACGU---UUGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 30695 | 0.67 | 0.854372 |
Target: 5'- cGCCGGCGgcgGCAacuucgUCCuggaagcugGCAAGCu -3' miRNA: 3'- aCGGCCGUaa-CGUa-----AGGua-------CGUUUGc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 11238 | 0.66 | 0.887789 |
Target: 5'- uUGCCGGCGcucgagUGCug-CCAgacggcccaaUGCAGGCc -3' miRNA: 3'- -ACGGCCGUa-----ACGuaaGGU----------ACGUUUGc -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 21475 | 0.69 | 0.754132 |
Target: 5'- aUGCCGGCcgAUUGC---CUAUGCGAcucGCGa -3' miRNA: 3'- -ACGGCCG--UAACGuaaGGUACGUU---UGC- -5' |
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16993 | 3' | -50.3 | NC_004333.2 | + | 18386 | 0.69 | 0.765002 |
Target: 5'- cGCCGGCAUcaugcucgUGCcgUCCGaaGCGcAACGc -3' miRNA: 3'- aCGGCCGUA--------ACGuaAGGUa-CGU-UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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