miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 3' -50.3 NC_004333.2 + 28950 0.66 0.879857
Target:  5'- aGCCcGUAUUGCucgagcgCCGUGCGgAACGc -3'
miRNA:   3'- aCGGcCGUAACGuaa----GGUACGU-UUGC- -5'
16993 3' -50.3 NC_004333.2 + 47222 1.09 0.002384
Target:  5'- cUGCCGGCAUUGCAUUCCAUGCAAACGc -3'
miRNA:   3'- -ACGGCCGUAACGUAAGGUACGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 16855 0.85 0.104961
Target:  5'- gGCCGGCAUUGCGggcgCCGUGCucGGCGu -3'
miRNA:   3'- aCGGCCGUAACGUaa--GGUACGu-UUGC- -5'
16993 3' -50.3 NC_004333.2 + 45520 0.8 0.199752
Target:  5'- cUGCCGGCGUUGCGgcugauacgCCG-GCAAGCGc -3'
miRNA:   3'- -ACGGCCGUAACGUaa-------GGUaCGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 32983 0.74 0.469946
Target:  5'- cUGCCGGCcgUGCGgau--UGCGAACGc -3'
miRNA:   3'- -ACGGCCGuaACGUaagguACGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 5215 0.73 0.491533
Target:  5'- cGCCGGCgagggugcggGUUGCAgcgcaUCCcgGCGAGCc -3'
miRNA:   3'- aCGGCCG----------UAACGUa----AGGuaCGUUUGc -5'
16993 3' -50.3 NC_004333.2 + 720 0.73 0.535995
Target:  5'- cGCCGGCgcGUUGCuagUCgAUGCGucgAACGg -3'
miRNA:   3'- aCGGCCG--UAACGua-AGgUACGU---UUGC- -5'
16993 3' -50.3 NC_004333.2 + 43582 0.72 0.558755
Target:  5'- cUGCCGGCGcgGCcgUUCAUGgaaaAGACGa -3'
miRNA:   3'- -ACGGCCGUaaCGuaAGGUACg---UUUGC- -5'
16993 3' -50.3 NC_004333.2 + 45190 0.72 0.593367
Target:  5'- cGCCGGCGagcgucuacgGCAUUCCGuUGaCGGGCGu -3'
miRNA:   3'- aCGGCCGUaa--------CGUAAGGU-AC-GUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 22241 0.67 0.845342
Target:  5'- cGCCGGCAUcgacgccgcgcGCAauagcuaCGUGCAAGCGc -3'
miRNA:   3'- aCGGCCGUAa----------CGUaag----GUACGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 39389 0.67 0.826538
Target:  5'- cGCCGGCGcaagGCAUUgCcgGCGAc-- -3'
miRNA:   3'- aCGGCCGUaa--CGUAAgGuaCGUUugc -5'
16993 3' -50.3 NC_004333.2 + 22938 0.67 0.826538
Target:  5'- gGCUGGCucgGCAUUUCAaccCGAACGg -3'
miRNA:   3'- aCGGCCGuaaCGUAAGGUac-GUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 22466 0.68 0.806815
Target:  5'- gGCCGGCGa-GCAagCCAUucucGCGGGCGu -3'
miRNA:   3'- aCGGCCGUaaCGUaaGGUA----CGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 24524 0.68 0.796638
Target:  5'- gGCCGGCg--GCGUUCCGccucaagGCGAGg- -3'
miRNA:   3'- aCGGCCGuaaCGUAAGGUa------CGUUUgc -5'
16993 3' -50.3 NC_004333.2 + 46246 0.68 0.786269
Target:  5'- cGCCGGU---GCGggCCAgcuggUGCAGACGc -3'
miRNA:   3'- aCGGCCGuaaCGUaaGGU-----ACGUUUGC- -5'
16993 3' -50.3 NC_004333.2 + 5205 0.66 0.909804
Target:  5'- gGCgCGGCGUcgGCA--CCGUcGCAAACu -3'
miRNA:   3'- aCG-GCCGUAa-CGUaaGGUA-CGUUUGc -5'
16993 3' -50.3 NC_004333.2 + 10676 0.74 0.459335
Target:  5'- cGCCGGCcggUGCAcgCUAUGCAcuCGg -3'
miRNA:   3'- aCGGCCGua-ACGUaaGGUACGUuuGC- -5'
16993 3' -50.3 NC_004333.2 + 18175 0.71 0.651638
Target:  5'- uUGCCGGCGUgccgggugaUGCGcucgUCGUGCGcGCGg -3'
miRNA:   3'- -ACGGCCGUA---------ACGUaa--GGUACGUuUGC- -5'
16993 3' -50.3 NC_004333.2 + 20323 0.71 0.651638
Target:  5'- uUGCCaGGC-UUGCcggCCGUGCcGACGg -3'
miRNA:   3'- -ACGG-CCGuAACGuaaGGUACGuUUGC- -5'
16993 3' -50.3 NC_004333.2 + 35489 0.71 0.651638
Target:  5'- gGCCGGUga-GCGUgCCGccUGCGAGCGg -3'
miRNA:   3'- aCGGCCGuaaCGUAaGGU--ACGUUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.