miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 19721 0.69 0.423458
Target:  5'- cGGCGCugGUgGCGugcaagacGGCGCcgcUGCCg -3'
miRNA:   3'- -CCGCGugCGaUGCuc------CCGCGuu-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 20898 0.69 0.404814
Target:  5'- cGGCGCAgcgcgUGCUACuuGGcGCGCAGgauUGCa -3'
miRNA:   3'- -CCGCGU-----GCGAUGcuCC-CGCGUU---ACGg -5'
16993 5' -57.2 NC_004333.2 + 20972 0.68 0.472222
Target:  5'- -aCGCGCGCgGCGcGGGCGagugGGUGCg -3'
miRNA:   3'- ccGCGUGCGaUGCuCCCGCg---UUACGg -5'
16993 5' -57.2 NC_004333.2 + 21143 0.67 0.523664
Target:  5'- aGCGCGCGCaacuugACGugauGGuGCGCuucgcgcUGCCg -3'
miRNA:   3'- cCGCGUGCGa-----UGCu---CC-CGCGuu-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 21528 0.7 0.352099
Target:  5'- cGGCGCgaucACGCUcACGAGcGGCG--GUGCg -3'
miRNA:   3'- -CCGCG----UGCGA-UGCUC-CCGCguUACGg -5'
16993 5' -57.2 NC_004333.2 + 21642 0.66 0.598854
Target:  5'- cGGaagGCAUGCUGCGc--GCGCAGaucgGCCa -3'
miRNA:   3'- -CCg--CGUGCGAUGCuccCGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 21861 0.72 0.268628
Target:  5'- cGGCGCGCGCUACaagcuGGuucgcuGCGCAuaGCCc -3'
miRNA:   3'- -CCGCGUGCGAUGcu---CC------CGCGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 22258 0.68 0.472222
Target:  5'- cGCGCAauaGCUACGugcaagcgcAGGGCgGCGAaGCg -3'
miRNA:   3'- cCGCGUg--CGAUGC---------UCCCG-CGUUaCGg -5'
16993 5' -57.2 NC_004333.2 + 22762 0.71 0.312024
Target:  5'- cGGCcgccgccgGCACGCUGC-AGGcGCGCuc-GCCg -3'
miRNA:   3'- -CCG--------CGUGCGAUGcUCC-CGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 22891 0.73 0.230234
Target:  5'- uGGCGCuCGUgACGAGcagaaGCGCGGUGCUg -3'
miRNA:   3'- -CCGCGuGCGaUGCUCc----CGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 25924 0.73 0.224304
Target:  5'- -uUGCACGUagcuauUGCGcGcGGCGCGAUGCCg -3'
miRNA:   3'- ccGCGUGCG------AUGCuC-CCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 27043 0.67 0.502804
Target:  5'- uGCGCACGgcCUuuaccuCGAcGGGCGU--UGCCg -3'
miRNA:   3'- cCGCGUGC--GAu-----GCU-CCCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 27048 0.72 0.282528
Target:  5'- uGCGCGCGCU-CGuucAGGGCGCuc-GCg -3'
miRNA:   3'- cCGCGUGCGAuGC---UCCCGCGuuaCGg -5'
16993 5' -57.2 NC_004333.2 + 27316 0.68 0.462237
Target:  5'- cGGC-CAgGCUGCcAGGGUGUAAaGUCg -3'
miRNA:   3'- -CCGcGUgCGAUGcUCCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 27638 0.7 0.32525
Target:  5'- cGGCGCGgccauguuacaggcCGCcaGCGAGcGGCGCGGcggcgGCCg -3'
miRNA:   3'- -CCGCGU--------------GCGa-UGCUC-CCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 28283 0.67 0.500738
Target:  5'- cGGCGCGgauggcccagagcUGCUgaGCGcGGGCGUAAUcggucgcacucgcGCCa -3'
miRNA:   3'- -CCGCGU-------------GCGA--UGCuCCCGCGUUA-------------CGG- -5'
16993 5' -57.2 NC_004333.2 + 28889 0.68 0.462237
Target:  5'- cGCGCgaucGCGCUcgGCGcAGgccGGCGCAuacuUGCCg -3'
miRNA:   3'- cCGCG----UGCGA--UGC-UC---CCGCGUu---ACGG- -5'
16993 5' -57.2 NC_004333.2 + 29886 0.67 0.49251
Target:  5'- cGGCGaaGCGCUGCGcgaucGGGccGCGCGcgGCa -3'
miRNA:   3'- -CCGCg-UGCGAUGC-----UCC--CGCGUuaCGg -5'
16993 5' -57.2 NC_004333.2 + 30627 0.66 0.544847
Target:  5'- cGUGCAgCGCUuCGGGGauguGCGCGAUcGCUu -3'
miRNA:   3'- cCGCGU-GCGAuGCUCC----CGCGUUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 31115 0.67 0.534218
Target:  5'- cGGCGCGaguUGCUGCucGcGCGCGA-GCCc -3'
miRNA:   3'- -CCGCGU---GCGAUGcuCcCGCGUUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.