miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 9846 0.68 0.482314
Target:  5'- cGGUcgGCACGCccuCGA-GGCGCAuuucGCCg -3'
miRNA:   3'- -CCG--CGUGCGau-GCUcCCGCGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 10524 0.72 0.271363
Target:  5'- gGGCGCGCGCU-CGAugaaugucugauccGGCGgGAUGUCg -3'
miRNA:   3'- -CCGCGUGCGAuGCUc-------------CCGCgUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 10993 0.76 0.143557
Target:  5'- cGGCGCGCGUcgUGAGcGGCGUgucgccgcgcugcggGAUGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCUC-CCGCG---------------UUACGG- -5'
16993 5' -57.2 NC_004333.2 + 11212 0.74 0.20729
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 11328 0.68 0.4813
Target:  5'- uGGuCGCGCGCgAUGAagGcGGCGCGGuucgucgucaccuUGCCg -3'
miRNA:   3'- -CC-GCGUGCGaUGCU--C-CCGCGUU-------------ACGG- -5'
16993 5' -57.2 NC_004333.2 + 11514 0.66 0.5663
Target:  5'- -aCGagGCGCUGCGAaGGCGUcAUGUCg -3'
miRNA:   3'- ccGCg-UGCGAUGCUcCCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 12080 0.67 0.523664
Target:  5'- uGCGUACGUgGCu-GGcGCGCAGcGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCC-CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 15767 0.66 0.544847
Target:  5'- aGCGa--GCUGCGcGaGGCGCGG-GCCg -3'
miRNA:   3'- cCGCgugCGAUGCuC-CCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 15828 0.7 0.360539
Target:  5'- uGCGCACGCUAUc-GGGCaGCGAcccggcaGCCg -3'
miRNA:   3'- cCGCGUGCGAUGcuCCCG-CGUUa------CGG- -5'
16993 5' -57.2 NC_004333.2 + 16533 0.67 0.534218
Target:  5'- gGGC-CGCGa-GCGGuGGCGCAAcUGCCc -3'
miRNA:   3'- -CCGcGUGCgaUGCUcCCGCGUU-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 16867 0.73 0.212834
Target:  5'- gGGCGC-CGUgcucgGCGucGGCGCAGgugcgGCCg -3'
miRNA:   3'- -CCGCGuGCGa----UGCucCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 16991 0.74 0.196576
Target:  5'- cGGCGUugucgaguacgGCGCgcCGucuGGGCgGCGAUGCCa -3'
miRNA:   3'- -CCGCG-----------UGCGauGCu--CCCG-CGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 17032 0.69 0.395688
Target:  5'- cGUGCACGCUGCaGGccaauGGCGUcAUGCUc -3'
miRNA:   3'- cCGCGUGCGAUGcUC-----CCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 17146 0.69 0.376961
Target:  5'- aGCGCAUGC-GCGAGGaagucguGCGCGucgacaagGCCg -3'
miRNA:   3'- cCGCGUGCGaUGCUCC-------CGCGUua------CGG- -5'
16993 5' -57.2 NC_004333.2 + 17688 0.71 0.304437
Target:  5'- cGGcCGCACGCU-CGGGcucgacaagguaGGCGCA--GCCg -3'
miRNA:   3'- -CC-GCGUGCGAuGCUC------------CCGCGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 17855 0.69 0.414071
Target:  5'- cGGcCGCGCGUaugGCGGGuggugucgcaGGCGCGAcggcgGCCa -3'
miRNA:   3'- -CC-GCGUGCGa--UGCUC----------CCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 18190 0.68 0.482314
Target:  5'- uGGUGCucGCGCUcgGCGccGGuGGCaGCGcgGCCg -3'
miRNA:   3'- -CCGCG--UGCGA--UGC--UC-CCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 18797 0.69 0.395688
Target:  5'- cGCGCuuaucGCGCggcCGcAGGGCGC-GUGCUg -3'
miRNA:   3'- cCGCG-----UGCGau-GC-UCCCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 19129 0.69 0.404814
Target:  5'- cGGCGCGauCGU---GGGcGGCGCGGUGCUc -3'
miRNA:   3'- -CCGCGU--GCGaugCUC-CCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 19496 0.72 0.24882
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.