miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 16533 0.67 0.534218
Target:  5'- gGGC-CGCGa-GCGGuGGCGCAAcUGCCc -3'
miRNA:   3'- -CCGcGUGCgaUGCUcCCGCGUU-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 41617 0.67 0.523664
Target:  5'- cGCGCuCGCUcgugcucugGCGGcagauugucGGGCGCGGgcugcgGCCg -3'
miRNA:   3'- cCGCGuGCGA---------UGCU---------CCCGCGUUa-----CGG- -5'
16993 5' -57.2 NC_004333.2 + 27043 0.67 0.502804
Target:  5'- uGCGCACGgcCUuuaccuCGAcGGGCGU--UGCCg -3'
miRNA:   3'- cCGCGUGC--GAu-----GCU-CCCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 1986 0.67 0.523664
Target:  5'- uGCGaguucguaGCGUUACGccGGCGCGgaugAUGCCc -3'
miRNA:   3'- cCGCg-------UGCGAUGCucCCGCGU----UACGG- -5'
16993 5' -57.2 NC_004333.2 + 21143 0.67 0.523664
Target:  5'- aGCGCGCGCaacuugACGugauGGuGCGCuucgcgcUGCCg -3'
miRNA:   3'- cCGCGUGCGa-----UGCu---CC-CGCGuu-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 1231 0.67 0.513191
Target:  5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAgGCUu -3'
miRNA:   3'- -CCGCGUGCGaUGcu-CC----CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 47975 0.67 0.513191
Target:  5'- uGGCGCAaGCcaagcCGGcGGGCGCAcgGgCa -3'
miRNA:   3'- -CCGCGUgCGau---GCU-CCCGCGUuaCgG- -5'
16993 5' -57.2 NC_004333.2 + 38551 0.67 0.513191
Target:  5'- aGGCGCGcCGCcgGCagccGGuGCGCAAccgGCCg -3'
miRNA:   3'- -CCGCGU-GCGa-UGcu--CC-CGCGUUa--CGG- -5'
16993 5' -57.2 NC_004333.2 + 34197 0.67 0.513191
Target:  5'- aGCGCGCGCaGCucGcGCGCAccgGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCcCGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 28283 0.67 0.500738
Target:  5'- cGGCGCGgauggcccagagcUGCUgaGCGcGGGCGUAAUcggucgcacucgcGCCa -3'
miRNA:   3'- -CCGCGU-------------GCGA--UGCuCCCGCGUUA-------------CGG- -5'
16993 5' -57.2 NC_004333.2 + 34415 0.67 0.49251
Target:  5'- -aCGC-CGC-GCGAGcGGCGCGcgGCg -3'
miRNA:   3'- ccGCGuGCGaUGCUC-CCGCGUuaCGg -5'
16993 5' -57.2 NC_004333.2 + 44422 0.67 0.533159
Target:  5'- gGGCucGCugGCUggugcguGCGA-GGCGCucgGCCu -3'
miRNA:   3'- -CCG--CGugCGA-------UGCUcCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 9624 0.67 0.513191
Target:  5'- uGCGCACcgGCUGCcGGcGGCGCGccugcGCCc -3'
miRNA:   3'- cCGCGUG--CGAUGcUC-CCGCGUua---CGG- -5'
16993 5' -57.2 NC_004333.2 + 12080 0.67 0.523664
Target:  5'- uGCGUACGUgGCu-GGcGCGCAGcGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCC-CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 22258 0.68 0.472222
Target:  5'- cGCGCAauaGCUACGugcaagcgcAGGGCgGCGAaGCg -3'
miRNA:   3'- cCGCGUg--CGAUGC---------UCCCG-CGUUaCGg -5'
16993 5' -57.2 NC_004333.2 + 9710 0.68 0.443578
Target:  5'- cGGCGCACGCgguucgcgaaacgccGCGucGGCGaCAugagcGCCg -3'
miRNA:   3'- -CCGCGUGCGa--------------UGCucCCGC-GUua---CGG- -5'
16993 5' -57.2 NC_004333.2 + 44379 0.68 0.482314
Target:  5'- aGGUGCGCuGCU-CGGcGGCGC-GUGCg -3'
miRNA:   3'- -CCGCGUG-CGAuGCUcCCGCGuUACGg -5'
16993 5' -57.2 NC_004333.2 + 48023 0.68 0.432971
Target:  5'- -cCGCGCGCUcugGCGuguuGGGCGCuggugguuuGUGCUc -3'
miRNA:   3'- ccGCGUGCGA---UGCu---CCCGCGu--------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 36175 0.68 0.482314
Target:  5'- aGCGCcUGC-ACGAgcacgagauuGGGCGCAA-GCCc -3'
miRNA:   3'- cCGCGuGCGaUGCU----------CCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 4594 0.68 0.462237
Target:  5'- cGCGCAcuCGCguucgagGCGAGcGCGCGAcacGCCa -3'
miRNA:   3'- cCGCGU--GCGa------UGCUCcCGCGUUa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.