miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 20898 0.69 0.404814
Target:  5'- cGGCGCAgcgcgUGCUACuuGGcGCGCAGgauUGCa -3'
miRNA:   3'- -CCGCGU-----GCGAUGcuCC-CGCGUU---ACGg -5'
16993 5' -57.2 NC_004333.2 + 17032 0.69 0.395688
Target:  5'- cGUGCACGCUGCaGGccaauGGCGUcAUGCUc -3'
miRNA:   3'- cCGCGUGCGAUGcUC-----CCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 9236 0.71 0.312024
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 43250 0.74 0.189367
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 42012 0.68 0.469215
Target:  5'- cGGUGCGCGUgaaGCGcgcggccaacgagcGGGGCGUGcucGCCg -3'
miRNA:   3'- -CCGCGUGCGa--UGC--------------UCCCGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 19721 0.69 0.423458
Target:  5'- cGGCGCugGUgGCGugcaagacGGCGCcgcUGCCg -3'
miRNA:   3'- -CCGCGugCGaUGCuc------CCGCGuu-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 17146 0.69 0.376961
Target:  5'- aGCGCAUGC-GCGAGGaagucguGCGCGucgacaagGCCg -3'
miRNA:   3'- cCGCGUGCGaUGCUCC-------CGCGUua------CGG- -5'
16993 5' -57.2 NC_004333.2 + 39186 0.74 0.181413
Target:  5'- uGCGCGCGCUGCaccGGCaGCAcgGCCc -3'
miRNA:   3'- cCGCGUGCGAUGcucCCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 45710 0.69 0.423458
Target:  5'- -aCGCACGCcugcaucuCGAGcccGGCGCGaacGUGCCg -3'
miRNA:   3'- ccGCGUGCGau------GCUC---CCGCGU---UACGG- -5'
16993 5' -57.2 NC_004333.2 + 33292 0.75 0.167295
Target:  5'- cGCGCGCGUUGCGucGGCcGCAucgaGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCucCCG-CGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 9099 0.69 0.386695
Target:  5'- uGGCuuGCGCUGuCGA--GCGCAAUGUCg -3'
miRNA:   3'- -CCGcgUGCGAU-GCUccCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 42099 0.69 0.404814
Target:  5'- uGCGCgacgagGCGUgucGCGAGGuGCGCcaguUGCCg -3'
miRNA:   3'- cCGCG------UGCGa--UGCUCC-CGCGuu--ACGG- -5'
16993 5' -57.2 NC_004333.2 + 6918 0.7 0.3438
Target:  5'- uGCGCACGUuugaggcgUGCGcGGGCGcCAGUcgaaGCCu -3'
miRNA:   3'- cCGCGUGCG--------AUGCuCCCGC-GUUA----CGG- -5'
16993 5' -57.2 NC_004333.2 + 6652 0.7 0.327627
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 19496 0.72 0.24882
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 11212 0.74 0.20729
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 44379 0.68 0.482314
Target:  5'- aGGUGCGCuGCU-CGGcGGCGC-GUGCg -3'
miRNA:   3'- -CCGCGUG-CGAuGCUcCCGCGuUACGg -5'
16993 5' -57.2 NC_004333.2 + 20972 0.68 0.472222
Target:  5'- -aCGCGCGCgGCGcGGGCGagugGGUGCg -3'
miRNA:   3'- ccGCGUGCGaUGCuCCCGCg---UUACGg -5'
16993 5' -57.2 NC_004333.2 + 27316 0.68 0.462237
Target:  5'- cGGC-CAgGCUGCcAGGGUGUAAaGUCg -3'
miRNA:   3'- -CCGcGUgCGAUGcUCCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 48023 0.68 0.432971
Target:  5'- -cCGCGCGCUcugGCGuguuGGGCGCuggugguuuGUGCUc -3'
miRNA:   3'- ccGCGUGCGA---UGCu---CCCGCGu--------UACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.