miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 4897 0.75 0.162812
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 17146 0.69 0.376961
Target:  5'- aGCGCAUGC-GCGAGGaagucguGCGCGucgacaagGCCg -3'
miRNA:   3'- cCGCGUGCGaUGCUCC-------CGCGUua------CGG- -5'
16993 5' -57.2 NC_004333.2 + 17032 0.69 0.395688
Target:  5'- cGUGCACGCUGCaGGccaauGGCGUcAUGCUc -3'
miRNA:   3'- cCGCGUGCGAUGcUC-----CCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 21642 0.66 0.598854
Target:  5'- cGGaagGCAUGCUGCGc--GCGCAGaucgGCCa -3'
miRNA:   3'- -CCg--CGUGCGAUGCuccCGCGUUa---CGG- -5'
16993 5' -57.2 NC_004333.2 + 11212 0.74 0.20729
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 25924 0.73 0.224304
Target:  5'- -uUGCACGUagcuauUGCGcGcGGCGCGAUGCCg -3'
miRNA:   3'- ccGCGUGCG------AUGCuC-CCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 19496 0.72 0.24882
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 4947 0.72 0.268628
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
16993 5' -57.2 NC_004333.2 + 6652 0.7 0.327627
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 38324 0.7 0.3438
Target:  5'- cGGCGaaauGCGCcuCGAGGGCGU---GCCg -3'
miRNA:   3'- -CCGCg---UGCGauGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 45659 0.7 0.333222
Target:  5'- cGCGCGCGCUGCGcAugcaccuaccgagcGGGCGCGcgaucaGCUa -3'
miRNA:   3'- cCGCGUGCGAUGC-U--------------CCCGCGUua----CGG- -5'
16993 5' -57.2 NC_004333.2 + 9236 0.71 0.312024
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 33292 0.75 0.167295
Target:  5'- cGCGCGCGUUGCGucGGCcGCAucgaGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCucCCG-CGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 6918 0.7 0.3438
Target:  5'- uGCGCACGUuugaggcgUGCGcGGGCGcCAGUcgaaGCCu -3'
miRNA:   3'- cCGCGUGCG--------AUGCuCCCGC-GUUA----CGG- -5'
16993 5' -57.2 NC_004333.2 + 39186 0.74 0.181413
Target:  5'- uGCGCGCGCUGCaccGGCaGCAcgGCCc -3'
miRNA:   3'- cCGCGUGCGAUGcucCCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 21861 0.72 0.268628
Target:  5'- cGGCGCGCGCUACaagcuGGuucgcuGCGCAuaGCCc -3'
miRNA:   3'- -CCGCGUGCGAUGcu---CC------CGCGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 1287 0.7 0.3438
Target:  5'- uGGCGCGCGUUGCGuuacgcgaucGGCGUGAauUGCa -3'
miRNA:   3'- -CCGCGUGCGAUGCuc--------CCGCGUU--ACGg -5'
16993 5' -57.2 NC_004333.2 + 9099 0.69 0.386695
Target:  5'- uGGCuuGCGCUGuCGA--GCGCAAUGUCg -3'
miRNA:   3'- -CCGcgUGCGAU-GCUccCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 43250 0.74 0.189367
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 22891 0.73 0.230234
Target:  5'- uGGCGCuCGUgACGAGcagaaGCGCGGUGCUg -3'
miRNA:   3'- -CCGCGuGCGaUGCUCc----CGCGUUACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.