miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 1231 0.67 0.513191
Target:  5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAgGCUu -3'
miRNA:   3'- -CCGCGUGCGaUGcu-CC----CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 1287 0.7 0.3438
Target:  5'- uGGCGCGCGUUGCGuuacgcgaucGGCGUGAauUGCa -3'
miRNA:   3'- -CCGCGUGCGAUGCuc--------CCGCGUU--ACGg -5'
16993 5' -57.2 NC_004333.2 + 1986 0.67 0.523664
Target:  5'- uGCGaguucguaGCGUUACGccGGCGCGgaugAUGCCc -3'
miRNA:   3'- cCGCg-------UGCGAUGCucCCGCGU----UACGG- -5'
16993 5' -57.2 NC_004333.2 + 4225 0.68 0.462237
Target:  5'- cGCGUugACGCU-CGAGaacaucGGCGUgagGAUGCCg -3'
miRNA:   3'- cCGCG--UGCGAuGCUC------CCGCG---UUACGG- -5'
16993 5' -57.2 NC_004333.2 + 4261 0.7 0.3438
Target:  5'- gGGUaucgGUGCGCUACGuGGcguuuggucGCGCAGUGCg -3'
miRNA:   3'- -CCG----CGUGCGAUGCuCC---------CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 4594 0.68 0.462237
Target:  5'- cGCGCAcuCGCguucgagGCGAGcGCGCGAcacGCCa -3'
miRNA:   3'- cCGCGU--GCGa------UGCUCcCGCGUUa--CGG- -5'
16993 5' -57.2 NC_004333.2 + 4897 0.75 0.162812
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 4947 0.72 0.268628
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
16993 5' -57.2 NC_004333.2 + 5051 0.68 0.462237
Target:  5'- cGGCuGUugGCcgACGucGGCGCGGcGCUg -3'
miRNA:   3'- -CCG-CGugCGa-UGCucCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 5198 0.7 0.360539
Target:  5'- aGCGCcgccCGCUcguccgccgGCGAGGGUGCGGguUGCa -3'
miRNA:   3'- cCGCGu---GCGA---------UGCUCCCGCGUU--ACGg -5'
16993 5' -57.2 NC_004333.2 + 6652 0.7 0.327627
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 6918 0.7 0.3438
Target:  5'- uGCGCACGUuugaggcgUGCGcGGGCGcCAGUcgaaGCCu -3'
miRNA:   3'- cCGCGUGCG--------AUGCuCCCGC-GUUA----CGG- -5'
16993 5' -57.2 NC_004333.2 + 7403 0.66 0.544847
Target:  5'- cGCGUGC-CUGCGgccAGGucuGCGCGAUGCg -3'
miRNA:   3'- cCGCGUGcGAUGC---UCC---CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 8915 0.7 0.366531
Target:  5'- cGCGCGCGCgUGCGccugccggccgcucGGGGUGCGGUcgaGCa -3'
miRNA:   3'- cCGCGUGCG-AUGC--------------UCCCGCGUUA---CGg -5'
16993 5' -57.2 NC_004333.2 + 9005 0.69 0.423458
Target:  5'- aGCGCGCGCagcACGGGcGGCagGAUGUCg -3'
miRNA:   3'- cCGCGUGCGa--UGCUC-CCGcgUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 9099 0.69 0.386695
Target:  5'- uGGCuuGCGCUGuCGA--GCGCAAUGUCg -3'
miRNA:   3'- -CCGcgUGCGAU-GCUccCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 9236 0.71 0.312024
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 9299 0.69 0.423458
Target:  5'- cGGCGCggguGCGCggACGGGcGGCGUucguAUGgCg -3'
miRNA:   3'- -CCGCG----UGCGa-UGCUC-CCGCGu---UACgG- -5'
16993 5' -57.2 NC_004333.2 + 9624 0.67 0.513191
Target:  5'- uGCGCACcgGCUGCcGGcGGCGCGccugcGCCc -3'
miRNA:   3'- cCGCGUG--CGAUGcUC-CCGCGUua---CGG- -5'
16993 5' -57.2 NC_004333.2 + 9710 0.68 0.443578
Target:  5'- cGGCGCACGCgguucgcgaaacgccGCGucGGCGaCAugagcGCCg -3'
miRNA:   3'- -CCGCGUGCGa--------------UGCucCCGC-GUua---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.