miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 47256 1.15 0.000219
Target:  5'- cGGCGCACGCUACGAGGGCGCAAUGCCg -3'
miRNA:   3'- -CCGCGUGCGAUGCUCCCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 10993 0.76 0.143557
Target:  5'- cGGCGCGCGUcgUGAGcGGCGUgucgccgcgcugcggGAUGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCUC-CCGCG---------------UUACGG- -5'
16993 5' -57.2 NC_004333.2 + 4897 0.75 0.162812
Target:  5'- aGCGCGCGCUGCGAuaGuGCGCcGUcGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCU--CcCGCGuUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 33292 0.75 0.167295
Target:  5'- cGCGCGCGUUGCGucGGCcGCAucgaGCCa -3'
miRNA:   3'- cCGCGUGCGAUGCucCCG-CGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 39855 0.75 0.176594
Target:  5'- gGGCGCguaACGCauaGCG-GGGCGCGA-GCCc -3'
miRNA:   3'- -CCGCG---UGCGa--UGCuCCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 39186 0.74 0.181413
Target:  5'- uGCGCGCGCUGCaccGGCaGCAcgGCCc -3'
miRNA:   3'- cCGCGUGCGAUGcucCCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 43250 0.74 0.189367
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 16991 0.74 0.196576
Target:  5'- cGGCGUugucgaguacgGCGCgcCGucuGGGCgGCGAUGCCa -3'
miRNA:   3'- -CCGCG-----------UGCGauGCu--CCCG-CGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 11212 0.74 0.20729
Target:  5'- cGCGCACGUgAUucGGGCGCGGcuccuUGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCCCGCGUU-----ACGG- -5'
16993 5' -57.2 NC_004333.2 + 16867 0.73 0.212834
Target:  5'- gGGCGC-CGUgcucgGCGucGGCGCAGgugcgGCCg -3'
miRNA:   3'- -CCGCGuGCGa----UGCucCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 25924 0.73 0.224304
Target:  5'- -uUGCACGUagcuauUGCGcGcGGCGCGAUGCCg -3'
miRNA:   3'- ccGCGUGCG------AUGCuC-CCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 22891 0.73 0.230234
Target:  5'- uGGCGCuCGUgACGAGcagaaGCGCGGUGCUg -3'
miRNA:   3'- -CCGCGuGCGaUGCUCc----CGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 19496 0.72 0.24882
Target:  5'- cGGCGCugGC-GCGcuGGcGGCGCucgugGCCg -3'
miRNA:   3'- -CCGCGugCGaUGC--UC-CCGCGuua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 41426 0.72 0.261887
Target:  5'- aGGCGCGCGac-CG-GGGCGCcGUGgCg -3'
miRNA:   3'- -CCGCGUGCgauGCuCCCGCGuUACgG- -5'
16993 5' -57.2 NC_004333.2 + 21861 0.72 0.268628
Target:  5'- cGGCGCGCGCUACaagcuGGuucgcuGCGCAuaGCCc -3'
miRNA:   3'- -CCGCGUGCGAUGcu---CC------CGCGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 4947 0.72 0.268628
Target:  5'- uGCGuCugGUugUACcAGGGCGCAAUGgCCg -3'
miRNA:   3'- cCGC-GugCG--AUGcUCCCGCGUUAC-GG- -5'
16993 5' -57.2 NC_004333.2 + 38418 0.72 0.268628
Target:  5'- uGGCGCuCGUUgACGAcGGGCGCGcauccggcgcucAUGUCg -3'
miRNA:   3'- -CCGCGuGCGA-UGCU-CCCGCGU------------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 10524 0.72 0.271363
Target:  5'- gGGCGCGCGCU-CGAugaaugucugauccGGCGgGAUGUCg -3'
miRNA:   3'- -CCGCGUGCGAuGCUc-------------CCGCgUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 36261 0.72 0.282528
Target:  5'- uGGCGCGCGCgcCGcu-GCGCA-UGCCg -3'
miRNA:   3'- -CCGCGUGCGauGCuccCGCGUuACGG- -5'
16993 5' -57.2 NC_004333.2 + 27048 0.72 0.282528
Target:  5'- uGCGCGCGCU-CGuucAGGGCGCuc-GCg -3'
miRNA:   3'- cCGCGUGCGAuGC---UCCCGCGuuaCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.