miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 17688 0.71 0.304437
Target:  5'- cGGcCGCACGCU-CGGGcucgacaagguaGGCGCA--GCCg -3'
miRNA:   3'- -CC-GCGUGCGAuGCUC------------CCGCGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 39231 0.71 0.304437
Target:  5'- cGCGCACGCgauggacaGCGccGGCGCGAacgaaGCCg -3'
miRNA:   3'- cCGCGUGCGa-------UGCucCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 22762 0.71 0.312024
Target:  5'- cGGCcgccgccgGCACGCUGC-AGGcGCGCuc-GCCg -3'
miRNA:   3'- -CCG--------CGUGCGAUGcUCC-CGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 9236 0.71 0.312024
Target:  5'- cGCGC-CGa-ACGGGGGCGCcucGCCg -3'
miRNA:   3'- cCGCGuGCgaUGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 35793 0.71 0.312024
Target:  5'- uGGCGCGCcggGCG-GGGCGCGGgcggGCg -3'
miRNA:   3'- -CCGCGUGcgaUGCuCCCGCGUUa---CGg -5'
16993 5' -57.2 NC_004333.2 + 44957 0.71 0.319754
Target:  5'- cGGCGUcauCGggGCGGGcGGCGCGccggGCCg -3'
miRNA:   3'- -CCGCGu--GCgaUGCUC-CCGCGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 27638 0.7 0.32525
Target:  5'- cGGCGCGgccauguuacaggcCGCcaGCGAGcGGCGCGGcggcgGCCg -3'
miRNA:   3'- -CCGCGU--------------GCGa-UGCUC-CCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 38758 0.7 0.327627
Target:  5'- cGGCGUGCGCagccCGcAGGGCaGCGAagacgacgaaaUGCCg -3'
miRNA:   3'- -CCGCGUGCGau--GC-UCCCG-CGUU-----------ACGG- -5'
16993 5' -57.2 NC_004333.2 + 6652 0.7 0.327627
Target:  5'- cGGCaGCGCGCUcgGCGcgcucgagcAGGcGCGCAuccGCCg -3'
miRNA:   3'- -CCG-CGUGCGA--UGC---------UCC-CGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 46357 0.7 0.327627
Target:  5'- uGCGC-CGCUGCGGauuuGGCGCg--GCCu -3'
miRNA:   3'- cCGCGuGCGAUGCUc---CCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 45659 0.7 0.333222
Target:  5'- cGCGCGCGCUGCGcAugcaccuaccgagcGGGCGCGcgaucaGCUa -3'
miRNA:   3'- cCGCGUGCGAUGC-U--------------CCCGCGUua----CGG- -5'
16993 5' -57.2 NC_004333.2 + 1287 0.7 0.3438
Target:  5'- uGGCGCGCGUUGCGuuacgcgaucGGCGUGAauUGCa -3'
miRNA:   3'- -CCGCGUGCGAUGCuc--------CCGCGUU--ACGg -5'
16993 5' -57.2 NC_004333.2 + 4261 0.7 0.3438
Target:  5'- gGGUaucgGUGCGCUACGuGGcguuuggucGCGCAGUGCg -3'
miRNA:   3'- -CCG----CGUGCGAUGCuCC---------CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 6918 0.7 0.3438
Target:  5'- uGCGCACGUuugaggcgUGCGcGGGCGcCAGUcgaaGCCu -3'
miRNA:   3'- cCGCGUGCG--------AUGCuCCCGC-GUUA----CGG- -5'
16993 5' -57.2 NC_004333.2 + 38324 0.7 0.3438
Target:  5'- cGGCGaaauGCGCcuCGAGGGCGU---GCCg -3'
miRNA:   3'- -CCGCg---UGCGauGCUCCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 21528 0.7 0.352099
Target:  5'- cGGCGCgaucACGCUcACGAGcGGCG--GUGCg -3'
miRNA:   3'- -CCGCG----UGCGA-UGCUC-CCGCguUACGg -5'
16993 5' -57.2 NC_004333.2 + 5198 0.7 0.360539
Target:  5'- aGCGCcgccCGCUcguccgccgGCGAGGGUGCGGguUGCa -3'
miRNA:   3'- cCGCGu---GCGA---------UGCUCCCGCGUU--ACGg -5'
16993 5' -57.2 NC_004333.2 + 15828 0.7 0.360539
Target:  5'- uGCGCACGCUAUc-GGGCaGCGAcccggcaGCCg -3'
miRNA:   3'- cCGCGUGCGAUGcuCCCG-CGUUa------CGG- -5'
16993 5' -57.2 NC_004333.2 + 8915 0.7 0.366531
Target:  5'- cGCGCGCGCgUGCGccugccggccgcucGGGGUGCGGUcgaGCa -3'
miRNA:   3'- cCGCGUGCG-AUGC--------------UCCCGCGUUA---CGg -5'
16993 5' -57.2 NC_004333.2 + 17146 0.69 0.376961
Target:  5'- aGCGCAUGC-GCGAGGaagucguGCGCGucgacaagGCCg -3'
miRNA:   3'- cCGCGUGCGaUGCUCC-------CGCGUua------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.