Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16993 | 5' | -57.2 | NC_004333.2 | + | 1986 | 0.67 | 0.523664 |
Target: 5'- uGCGaguucguaGCGUUACGccGGCGCGgaugAUGCCc -3' miRNA: 3'- cCGCg-------UGCGAUGCucCCGCGU----UACGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 41617 | 0.67 | 0.523664 |
Target: 5'- cGCGCuCGCUcgugcucugGCGGcagauugucGGGCGCGGgcugcgGCCg -3' miRNA: 3'- cCGCGuGCGA---------UGCU---------CCCGCGUUa-----CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 12080 | 0.67 | 0.523664 |
Target: 5'- uGCGUACGUgGCu-GGcGCGCAGcGCCg -3' miRNA: 3'- cCGCGUGCGaUGcuCC-CGCGUUaCGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 1231 | 0.67 | 0.513191 |
Target: 5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAgGCUu -3' miRNA: 3'- -CCGCGUGCGaUGcu-CC----CGCGUUaCGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 47975 | 0.67 | 0.513191 |
Target: 5'- uGGCGCAaGCcaagcCGGcGGGCGCAcgGgCa -3' miRNA: 3'- -CCGCGUgCGau---GCU-CCCGCGUuaCgG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 38551 | 0.67 | 0.513191 |
Target: 5'- aGGCGCGcCGCcgGCagccGGuGCGCAAccgGCCg -3' miRNA: 3'- -CCGCGU-GCGa-UGcu--CC-CGCGUUa--CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 48094 | 0.67 | 0.513191 |
Target: 5'- aGGCGCAgGCgGCaaccGGGCGCGcgcaccgcGCCg -3' miRNA: 3'- -CCGCGUgCGaUGcu--CCCGCGUua------CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 34197 | 0.67 | 0.513191 |
Target: 5'- aGCGCGCGCaGCucGcGCGCAccgGCCg -3' miRNA: 3'- cCGCGUGCGaUGcuCcCGCGUua-CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 9624 | 0.67 | 0.513191 |
Target: 5'- uGCGCACcgGCUGCcGGcGGCGCGccugcGCCc -3' miRNA: 3'- cCGCGUG--CGAUGcUC-CCGCGUua---CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 27043 | 0.67 | 0.502804 |
Target: 5'- uGCGCACGgcCUuuaccuCGAcGGGCGU--UGCCg -3' miRNA: 3'- cCGCGUGC--GAu-----GCU-CCCGCGuuACGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 28283 | 0.67 | 0.500738 |
Target: 5'- cGGCGCGgauggcccagagcUGCUgaGCGcGGGCGUAAUcggucgcacucgcGCCa -3' miRNA: 3'- -CCGCGU-------------GCGA--UGCuCCCGCGUUA-------------CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 29886 | 0.67 | 0.49251 |
Target: 5'- cGGCGaaGCGCUGCGcgaucGGGccGCGCGcgGCa -3' miRNA: 3'- -CCGCg-UGCGAUGC-----UCC--CGCGUuaCGg -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 37781 | 0.67 | 0.49251 |
Target: 5'- aGGCcaaGCAgGCcaaggaUGCGaAGcGGCGCGAUGCg -3' miRNA: 3'- -CCG---CGUgCG------AUGC-UC-CCGCGUUACGg -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 34415 | 0.67 | 0.49251 |
Target: 5'- -aCGC-CGC-GCGAGcGGCGCGcgGCg -3' miRNA: 3'- ccGCGuGCGaUGCUC-CCGCGUuaCGg -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 34531 | 0.68 | 0.482314 |
Target: 5'- cGCGCA-GCUGCccGAGuaccGCGCGAUGCa -3' miRNA: 3'- cCGCGUgCGAUG--CUCc---CGCGUUACGg -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 36175 | 0.68 | 0.482314 |
Target: 5'- aGCGCcUGC-ACGAgcacgagauuGGGCGCAA-GCCc -3' miRNA: 3'- cCGCGuGCGaUGCU----------CCCGCGUUaCGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 9846 | 0.68 | 0.482314 |
Target: 5'- cGGUcgGCACGCccuCGA-GGCGCAuuucGCCg -3' miRNA: 3'- -CCG--CGUGCGau-GCUcCCGCGUua--CGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 44379 | 0.68 | 0.482314 |
Target: 5'- aGGUGCGCuGCU-CGGcGGCGC-GUGCg -3' miRNA: 3'- -CCGCGUG-CGAuGCUcCCGCGuUACGg -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 18190 | 0.68 | 0.482314 |
Target: 5'- uGGUGCucGCGCUcgGCGccGGuGGCaGCGcgGCCg -3' miRNA: 3'- -CCGCG--UGCGA--UGC--UC-CCG-CGUuaCGG- -5' |
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16993 | 5' | -57.2 | NC_004333.2 | + | 11328 | 0.68 | 0.4813 |
Target: 5'- uGGuCGCGCGCgAUGAagGcGGCGCGGuucgucgucaccuUGCCg -3' miRNA: 3'- -CC-GCGUGCGaUGCU--C-CCGCGUU-------------ACGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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