miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 22258 0.68 0.472222
Target:  5'- cGCGCAauaGCUACGugcaagcgcAGGGCgGCGAaGCg -3'
miRNA:   3'- cCGCGUg--CGAUGC---------UCCCG-CGUUaCGg -5'
16993 5' -57.2 NC_004333.2 + 20972 0.68 0.472222
Target:  5'- -aCGCGCGCgGCGcGGGCGagugGGUGCg -3'
miRNA:   3'- ccGCGUGCGaUGCuCCCGCg---UUACGg -5'
16993 5' -57.2 NC_004333.2 + 44877 0.68 0.471218
Target:  5'- cGCGCGcCGCcGCGcgcacaaggagaaAGGGCGU--UGCCu -3'
miRNA:   3'- cCGCGU-GCGaUGC-------------UCCCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 42012 0.68 0.469215
Target:  5'- cGGUGCGCGUgaaGCGcgcggccaacgagcGGGGCGUGcucGCCg -3'
miRNA:   3'- -CCGCGUGCGa--UGC--------------UCCCGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 5051 0.68 0.462237
Target:  5'- cGGCuGUugGCcgACGucGGCGCGGcGCUg -3'
miRNA:   3'- -CCG-CGugCGa-UGCucCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 4225 0.68 0.462237
Target:  5'- cGCGUugACGCU-CGAGaacaucGGCGUgagGAUGCCg -3'
miRNA:   3'- cCGCG--UGCGAuGCUC------CCGCG---UUACGG- -5'
16993 5' -57.2 NC_004333.2 + 27316 0.68 0.462237
Target:  5'- cGGC-CAgGCUGCcAGGGUGUAAaGUCg -3'
miRNA:   3'- -CCGcGUgCGAUGcUCCCGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 4594 0.68 0.462237
Target:  5'- cGCGCAcuCGCguucgagGCGAGcGCGCGAcacGCCa -3'
miRNA:   3'- cCGCGU--GCGa------UGCUCcCGCGUUa--CGG- -5'
16993 5' -57.2 NC_004333.2 + 28889 0.68 0.462237
Target:  5'- cGCGCgaucGCGCUcgGCGcAGgccGGCGCAuacuUGCCg -3'
miRNA:   3'- cCGCG----UGCGA--UGC-UC---CCGCGUu---ACGG- -5'
16993 5' -57.2 NC_004333.2 + 9710 0.68 0.443578
Target:  5'- cGGCGCACGCgguucgcgaaacgccGCGucGGCGaCAugagcGCCg -3'
miRNA:   3'- -CCGCGUGCGa--------------UGCucCCGC-GUua---CGG- -5'
16993 5' -57.2 NC_004333.2 + 48023 0.68 0.432971
Target:  5'- -cCGCGCGCUcugGCGuguuGGGCGCuggugguuuGUGCUc -3'
miRNA:   3'- ccGCGUGCGA---UGCu---CCCGCGu--------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 9299 0.69 0.423458
Target:  5'- cGGCGCggguGCGCggACGGGcGGCGUucguAUGgCg -3'
miRNA:   3'- -CCGCG----UGCGa-UGCUC-CCGCGu---UACgG- -5'
16993 5' -57.2 NC_004333.2 + 45710 0.69 0.423458
Target:  5'- -aCGCACGCcugcaucuCGAGcccGGCGCGaacGUGCCg -3'
miRNA:   3'- ccGCGUGCGau------GCUC---CCGCGU---UACGG- -5'
16993 5' -57.2 NC_004333.2 + 9005 0.69 0.423458
Target:  5'- aGCGCGCGCagcACGGGcGGCagGAUGUCg -3'
miRNA:   3'- cCGCGUGCGa--UGCUC-CCGcgUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 19721 0.69 0.423458
Target:  5'- cGGCGCugGUgGCGugcaagacGGCGCcgcUGCCg -3'
miRNA:   3'- -CCGCGugCGaUGCuc------CCGCGuu-ACGG- -5'
16993 5' -57.2 NC_004333.2 + 17855 0.69 0.414071
Target:  5'- cGGcCGCGCGUaugGCGGGuggugucgcaGGCGCGAcggcgGCCa -3'
miRNA:   3'- -CC-GCGUGCGa--UGCUC----------CCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 41437 0.69 0.414071
Target:  5'- aGGCGC-UGCUcgACGcGGGCGagucgGCCg -3'
miRNA:   3'- -CCGCGuGCGA--UGCuCCCGCguua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 47480 0.69 0.414071
Target:  5'- cGGCGacugcCGCGCUgaACGA-GGCGCcg-GCCg -3'
miRNA:   3'- -CCGC-----GUGCGA--UGCUcCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 20898 0.69 0.404814
Target:  5'- cGGCGCAgcgcgUGCUACuuGGcGCGCAGgauUGCa -3'
miRNA:   3'- -CCGCGU-----GCGAUGcuCC-CGCGUU---ACGg -5'
16993 5' -57.2 NC_004333.2 + 38933 0.69 0.404814
Target:  5'- -cCGCACGCgGCGAGgcgcccccguucGGCGCGAUGg- -3'
miRNA:   3'- ccGCGUGCGaUGCUC------------CCGCGUUACgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.