miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 48094 0.67 0.513191
Target:  5'- aGGCGCAgGCgGCaaccGGGCGCGcgcaccgcGCCg -3'
miRNA:   3'- -CCGCGUgCGaUGcu--CCCGCGUua------CGG- -5'
16993 5' -57.2 NC_004333.2 + 48023 0.68 0.432971
Target:  5'- -cCGCGCGCUcugGCGuguuGGGCGCuggugguuuGUGCUc -3'
miRNA:   3'- ccGCGUGCGA---UGCu---CCCGCGu--------UACGG- -5'
16993 5' -57.2 NC_004333.2 + 47975 0.67 0.513191
Target:  5'- uGGCGCAaGCcaagcCGGcGGGCGCAcgGgCa -3'
miRNA:   3'- -CCGCGUgCGau---GCU-CCCGCGUuaCgG- -5'
16993 5' -57.2 NC_004333.2 + 47480 0.69 0.414071
Target:  5'- cGGCGacugcCGCGCUgaACGA-GGCGCcg-GCCg -3'
miRNA:   3'- -CCGC-----GUGCGA--UGCUcCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 47256 1.15 0.000219
Target:  5'- cGGCGCACGCUACGAGGGCGCAAUGCCg -3'
miRNA:   3'- -CCGCGUGCGAUGCUCCCGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 46357 0.7 0.327627
Target:  5'- uGCGC-CGCUGCGGauuuGGCGCg--GCCu -3'
miRNA:   3'- cCGCGuGCGAUGCUc---CCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 45710 0.69 0.423458
Target:  5'- -aCGCACGCcugcaucuCGAGcccGGCGCGaacGUGCCg -3'
miRNA:   3'- ccGCGUGCGau------GCUC---CCGCGU---UACGG- -5'
16993 5' -57.2 NC_004333.2 + 45659 0.7 0.333222
Target:  5'- cGCGCGCGCUGCGcAugcaccuaccgagcGGGCGCGcgaucaGCUa -3'
miRNA:   3'- cCGCGUGCGAUGC-U--------------CCCGCGUua----CGG- -5'
16993 5' -57.2 NC_004333.2 + 45569 0.66 0.595584
Target:  5'- cGGUGCucaugGCGCUcgaccagcccggucGCGAGauCGUGAUGCCg -3'
miRNA:   3'- -CCGCG-----UGCGA--------------UGCUCccGCGUUACGG- -5'
16993 5' -57.2 NC_004333.2 + 45503 0.66 0.5663
Target:  5'- cGGCGCgACGCUGCaAGcugccGGCGUugcgGCUg -3'
miRNA:   3'- -CCGCG-UGCGAUGcUC-----CCGCGuua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 45166 0.66 0.587963
Target:  5'- -uCGCGCGCUACGucGcGGCGgAcgcGCCg -3'
miRNA:   3'- ccGCGUGCGAUGCu-C-CCGCgUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 44957 0.71 0.319754
Target:  5'- cGGCGUcauCGggGCGGGcGGCGCGccggGCCg -3'
miRNA:   3'- -CCGCGu--GCgaUGCUC-CCGCGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 44877 0.68 0.471218
Target:  5'- cGCGCGcCGCcGCGcgcacaaggagaaAGGGCGU--UGCCu -3'
miRNA:   3'- cCGCGU-GCGaUGC-------------UCCCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 44422 0.67 0.533159
Target:  5'- gGGCucGCugGCUggugcguGCGA-GGCGCucgGCCu -3'
miRNA:   3'- -CCG--CGugCGA-------UGCUcCCGCGuuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 44379 0.68 0.482314
Target:  5'- aGGUGCGCuGCU-CGGcGGCGC-GUGCg -3'
miRNA:   3'- -CCGCGUG-CGAuGCUcCCGCGuUACGg -5'
16993 5' -57.2 NC_004333.2 + 43384 0.66 0.5663
Target:  5'- aGCGuCACGCgACGcGGGCuCAcccUGCCg -3'
miRNA:   3'- cCGC-GUGCGaUGCuCCCGcGUu--ACGG- -5'
16993 5' -57.2 NC_004333.2 + 43295 0.66 0.598854
Target:  5'- aGCGCGCGCUACauggucAGcGGCgGCAGcgGCa -3'
miRNA:   3'- cCGCGUGCGAUGc-----UC-CCG-CGUUa-CGg -5'
16993 5' -57.2 NC_004333.2 + 43250 0.74 0.189367
Target:  5'- cGCGC-CGCaucugccagugagACGGGGGCGCAAggggcGCCg -3'
miRNA:   3'- cCGCGuGCGa------------UGCUCCCGCGUUa----CGG- -5'
16993 5' -57.2 NC_004333.2 + 42099 0.69 0.404814
Target:  5'- uGCGCgacgagGCGUgucGCGAGGuGCGCcaguUGCCg -3'
miRNA:   3'- cCGCG------UGCGa--UGCUCC-CGCGuu--ACGG- -5'
16993 5' -57.2 NC_004333.2 + 42012 0.68 0.469215
Target:  5'- cGGUGCGCGUgaaGCGcgcggccaacgagcGGGGCGUGcucGCCg -3'
miRNA:   3'- -CCGCGUGCGa--UGC--------------UCCCGCGUua-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.