miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16993 5' -57.2 NC_004333.2 + 44877 0.68 0.471218
Target:  5'- cGCGCGcCGCcGCGcgcacaaggagaaAGGGCGU--UGCCu -3'
miRNA:   3'- cCGCGU-GCGaUGC-------------UCCCGCGuuACGG- -5'
16993 5' -57.2 NC_004333.2 + 38551 0.67 0.513191
Target:  5'- aGGCGCGcCGCcgGCagccGGuGCGCAAccgGCCg -3'
miRNA:   3'- -CCGCGU-GCGa-UGcu--CC-CGCGUUa--CGG- -5'
16993 5' -57.2 NC_004333.2 + 34197 0.67 0.513191
Target:  5'- aGCGCGCGCaGCucGcGCGCAccgGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCcCGCGUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 28283 0.67 0.500738
Target:  5'- cGGCGCGgauggcccagagcUGCUgaGCGcGGGCGUAAUcggucgcacucgcGCCa -3'
miRNA:   3'- -CCGCGU-------------GCGA--UGCuCCCGCGUUA-------------CGG- -5'
16993 5' -57.2 NC_004333.2 + 34415 0.67 0.49251
Target:  5'- -aCGC-CGC-GCGAGcGGCGCGcgGCg -3'
miRNA:   3'- ccGCGuGCGaUGCUC-CCGCGUuaCGg -5'
16993 5' -57.2 NC_004333.2 + 34531 0.68 0.482314
Target:  5'- cGCGCA-GCUGCccGAGuaccGCGCGAUGCa -3'
miRNA:   3'- cCGCGUgCGAUG--CUCc---CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 18190 0.68 0.482314
Target:  5'- uGGUGCucGCGCUcgGCGccGGuGGCaGCGcgGCCg -3'
miRNA:   3'- -CCGCG--UGCGA--UGC--UC-CCG-CGUuaCGG- -5'
16993 5' -57.2 NC_004333.2 + 9846 0.68 0.482314
Target:  5'- cGGUcgGCACGCccuCGA-GGCGCAuuucGCCg -3'
miRNA:   3'- -CCG--CGUGCGau-GCUcCCGCGUua--CGG- -5'
16993 5' -57.2 NC_004333.2 + 22258 0.68 0.472222
Target:  5'- cGCGCAauaGCUACGugcaagcgcAGGGCgGCGAaGCg -3'
miRNA:   3'- cCGCGUg--CGAUGC---------UCCCG-CGUUaCGg -5'
16993 5' -57.2 NC_004333.2 + 47975 0.67 0.513191
Target:  5'- uGGCGCAaGCcaagcCGGcGGGCGCAcgGgCa -3'
miRNA:   3'- -CCGCGUgCGau---GCU-CCCGCGUuaCgG- -5'
16993 5' -57.2 NC_004333.2 + 1231 0.67 0.513191
Target:  5'- cGGCGCGCGCcGCcuuGGcugcGCGCGAgGCUu -3'
miRNA:   3'- -CCGCGUGCGaUGcu-CC----CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 12080 0.67 0.523664
Target:  5'- uGCGUACGUgGCu-GGcGCGCAGcGCCg -3'
miRNA:   3'- cCGCGUGCGaUGcuCC-CGCGUUaCGG- -5'
16993 5' -57.2 NC_004333.2 + 45166 0.66 0.587963
Target:  5'- -uCGCGCGCUACGucGcGGCGgAcgcGCCg -3'
miRNA:   3'- ccGCGUGCGAUGCu-C-CCGCgUua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 37113 0.66 0.570617
Target:  5'- gGGcCGCACGCccgGCGGucgagaauucgacccGGGCGCGcuugGCg -3'
miRNA:   3'- -CC-GCGUGCGa--UGCU---------------CCCGCGUua--CGg -5'
16993 5' -57.2 NC_004333.2 + 45503 0.66 0.5663
Target:  5'- cGGCGCgACGCUGCaAGcugccGGCGUugcgGCUg -3'
miRNA:   3'- -CCGCG-UGCGAUGcUC-----CCGCGuua-CGG- -5'
16993 5' -57.2 NC_004333.2 + 31159 0.66 0.5663
Target:  5'- aGCGUgcacgagucgaGCGCgGCGAcGGCGU-AUGCCg -3'
miRNA:   3'- cCGCG-----------UGCGaUGCUcCCGCGuUACGG- -5'
16993 5' -57.2 NC_004333.2 + 43384 0.66 0.5663
Target:  5'- aGCGuCACGCgACGcGGGCuCAcccUGCCg -3'
miRNA:   3'- cCGC-GUGCGaUGCuCCCGcGUu--ACGG- -5'
16993 5' -57.2 NC_004333.2 + 30627 0.66 0.544847
Target:  5'- cGUGCAgCGCUuCGGGGauguGCGCGAUcGCUu -3'
miRNA:   3'- cCGCGU-GCGAuGCUCC----CGCGUUA-CGG- -5'
16993 5' -57.2 NC_004333.2 + 7403 0.66 0.544847
Target:  5'- cGCGUGC-CUGCGgccAGGucuGCGCGAUGCg -3'
miRNA:   3'- cCGCGUGcGAUGC---UCC---CGCGUUACGg -5'
16993 5' -57.2 NC_004333.2 + 15767 0.66 0.544847
Target:  5'- aGCGa--GCUGCGcGaGGCGCGG-GCCg -3'
miRNA:   3'- cCGCgugCGAUGCuC-CCGCGUUaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.