miRNA display CGI


Results 61 - 80 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 30941 0.67 0.461835
Target:  5'- uGCGCgGGCagGCCGGCUUUGCcuuGCaguaGCGGCa -3'
miRNA:   3'- -CGUG-CCG--UGGCUGAAGCG---CG----CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 47451 0.67 0.457918
Target:  5'- cGCaACGGCAaucaaccucgccaCGGCgcUCGCGgGCGGCg -3'
miRNA:   3'- -CG-UGCCGUg------------GCUGa-AGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 18304 0.67 0.452076
Target:  5'- aGCGCuuCGCCGACgacuacCGCGCGCG-CUu -3'
miRNA:   3'- -CGUGccGUGGCUGaa----GCGCGCGCuGA- -5'
16994 5' -58.2 NC_004333.2 + 3003 0.67 0.452076
Target:  5'- cGC-CGGCGCguccgccgCGACguaGCGCGCGAa- -3'
miRNA:   3'- -CGuGCCGUG--------GCUGaagCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 29334 0.67 0.452076
Target:  5'- cGCACGGCaACUGcguACUgcCGCGCG-GGCUu -3'
miRNA:   3'- -CGUGCCG-UGGC---UGAa-GCGCGCgCUGA- -5'
16994 5' -58.2 NC_004333.2 + 46923 0.67 0.452076
Target:  5'- cCGCGaGCGCCGcgaaGCcUCGCGCGCaGCc -3'
miRNA:   3'- cGUGC-CGUGGC----UGaAGCGCGCGcUGa -5'
16994 5' -58.2 NC_004333.2 + 19757 0.68 0.44243
Target:  5'- aGCGCGaCACCGGCgcgacacgUUGCGauuGCGGCg -3'
miRNA:   3'- -CGUGCcGUGGCUGa-------AGCGCg--CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 2953 0.68 0.44243
Target:  5'- aGguCGGCACCGACaa-GCaCGUGGCc -3'
miRNA:   3'- -CguGCCGUGGCUGaagCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 10780 0.68 0.44243
Target:  5'- cCGCGaGCGCCGACguaggaCGaugaggacggcCGCGCGACg -3'
miRNA:   3'- cGUGC-CGUGGCUGaa----GC-----------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 27199 0.68 0.44243
Target:  5'- -gGCGGCagACCGuGCUUCGCGCG-GuACa -3'
miRNA:   3'- cgUGCCG--UGGC-UGAAGCGCGCgC-UGa -5'
16994 5' -58.2 NC_004333.2 + 47490 0.68 0.441472
Target:  5'- cGCGCugaacgaGGCGCCGGC--CG-GCGCGACc -3'
miRNA:   3'- -CGUG-------CCGUGGCUGaaGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 20986 0.68 0.439559
Target:  5'- aGCACGGUcugccgccacACCucgggggcacgcauGGCUgaUCGCGCGcCGACa -3'
miRNA:   3'- -CGUGCCG----------UGG--------------CUGA--AGCGCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 25940 0.68 0.432902
Target:  5'- cGCGCGGCgcgauGCCGGCggccaGUaCGCGGCg -3'
miRNA:   3'- -CGUGCCG-----UGGCUGaag--CGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13147 0.68 0.423495
Target:  5'- aGCGCGucaCGCCGAUggugUUCG-GCGCGACc -3'
miRNA:   3'- -CGUGCc--GUGGCUG----AAGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 44085 0.68 0.423495
Target:  5'- cGCGCccgcucgguaagGGCGgCGACUUCGCaucguuuCGCGGCg -3'
miRNA:   3'- -CGUG------------CCGUgGCUGAAGCGc------GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 14871 0.68 0.423495
Target:  5'- cGCGcCGGUuggcucgaugcgGCCGACgcaacgCGCGCGCucGGCUg -3'
miRNA:   3'- -CGU-GCCG------------UGGCUGaa----GCGCGCG--CUGA- -5'
16994 5' -58.2 NC_004333.2 + 10133 0.68 0.423495
Target:  5'- aGguCGGCauaGCCGACcacUUCGCGacCGCGAUa -3'
miRNA:   3'- -CguGCCG---UGGCUG---AAGCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19499 0.68 0.423495
Target:  5'- cGCugGcGCGCUGGCggCGCuCGUGGCc -3'
miRNA:   3'- -CGugC-CGUGGCUGaaGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 6209 0.68 0.414211
Target:  5'- --uUGGCAUCGGCUUguucuucgCGUGCGCGAa- -3'
miRNA:   3'- cguGCCGUGGCUGAA--------GCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 20734 0.68 0.414211
Target:  5'- gGCGCGcGCGCUgccgGACaUCGcCGaCGCGGCUg -3'
miRNA:   3'- -CGUGC-CGUGG----CUGaAGC-GC-GCGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.