miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 13763 0.67 0.501927
Target:  5'- cGC-CGcGCGCCG-C-UCGCGCgGCGugUa -3'
miRNA:   3'- -CGuGC-CGUGGCuGaAGCGCG-CGCugA- -5'
16994 5' -58.2 NC_004333.2 + 16024 0.67 0.501927
Target:  5'- gGC-CGGCcuGCCGACagUCGCcGCGUucGACg -3'
miRNA:   3'- -CGuGCCG--UGGCUGa-AGCG-CGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 26171 0.67 0.501927
Target:  5'- cGCcCGcGCGCUGA-UUCGCGC-CGACg -3'
miRNA:   3'- -CGuGC-CGUGGCUgAAGCGCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19697 0.67 0.501927
Target:  5'- uGCGCGugccgcGUugCGACUguggCGCGCGUaACUg -3'
miRNA:   3'- -CGUGC------CGugGCUGAa---GCGCGCGcUGA- -5'
16994 5' -58.2 NC_004333.2 + 29912 0.67 0.495812
Target:  5'- cGCGCGGCauccucggccgcuuuGCCauGGCUUCGaaaauGCGCGAa- -3'
miRNA:   3'- -CGUGCCG---------------UGG--CUGAAGCg----CGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 37667 0.67 0.495812
Target:  5'- aGCGCGcGCccgacccgcucgucgGCCGGCccgGCGCGUGGCg -3'
miRNA:   3'- -CGUGC-CG---------------UGGCUGaagCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 40852 0.67 0.491755
Target:  5'- cGCGCcuucuGGuCGCCGGCgaugGuCGCGCGACUc -3'
miRNA:   3'- -CGUG-----CC-GUGGCUGaag-C-GCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 8358 0.67 0.491755
Target:  5'- uCACGGCAgCCGGgUaUGCGCGUucgGACg -3'
miRNA:   3'- cGUGCCGU-GGCUgAaGCGCGCG---CUGa -5'
16994 5' -58.2 NC_004333.2 + 48014 0.67 0.491755
Target:  5'- cGCGCcaGGCGCCGAUcgugugcUCGCGCcgaaucaCGACUa -3'
miRNA:   3'- -CGUG--CCGUGGCUGa------AGCGCGc------GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 33953 0.67 0.491755
Target:  5'- -gACGGCACCGugauGCccgUCGCGaGUGACc -3'
miRNA:   3'- cgUGCCGUGGC----UGa--AGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9557 0.67 0.491755
Target:  5'- -uGCGGCGCCGA--UCGUG-GCGAg- -3'
miRNA:   3'- cgUGCCGUGGCUgaAGCGCgCGCUga -5'
16994 5' -58.2 NC_004333.2 + 9261 0.67 0.481679
Target:  5'- cGUGCGGCAuaGcCUUCGUGCGgauuCGGCUu -3'
miRNA:   3'- -CGUGCCGUggCuGAAGCGCGC----GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 11209 0.67 0.481679
Target:  5'- cCGCGcGCACgUGA-UUCGgGCGCGGCUc -3'
miRNA:   3'- cGUGC-CGUG-GCUgAAGCgCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 13971 0.67 0.481679
Target:  5'- -gGCGGCgGCCGG---UGCGCGCGAgCUg -3'
miRNA:   3'- cgUGCCG-UGGCUgaaGCGCGCGCU-GA- -5'
16994 5' -58.2 NC_004333.2 + 30555 0.67 0.471704
Target:  5'- cCACGGCACCGGg--CGCgGC-CGGCg -3'
miRNA:   3'- cGUGCCGUGGCUgaaGCG-CGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3551 0.67 0.471704
Target:  5'- aCGCGGUGCCG-CgcaGCGCGuCGGCc -3'
miRNA:   3'- cGUGCCGUGGCuGaagCGCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 21410 0.67 0.470712
Target:  5'- aGCGCGGCGCCGGaa-UGgGCaaauuggGCGGCg -3'
miRNA:   3'- -CGUGCCGUGGCUgaaGCgCG-------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9208 0.67 0.470712
Target:  5'- uCGCGGUgcgcACCGACUUCGCauccaucGCGCcGAa- -3'
miRNA:   3'- cGUGCCG----UGGCUGAAGCG-------CGCG-CUga -5'
16994 5' -58.2 NC_004333.2 + 22863 0.67 0.461835
Target:  5'- -uGCGGC-CCGGCgaUCG-GCGCGAUc -3'
miRNA:   3'- cgUGCCGuGGCUGa-AGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30941 0.67 0.461835
Target:  5'- uGCGCgGGCagGCCGGCUUUGCcuuGCaguaGCGGCa -3'
miRNA:   3'- -CGUG-CCG--UGGCUGAAGCG---CG----CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.