Results 41 - 60 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16994 | 5' | -58.2 | NC_004333.2 | + | 31116 | 0.69 | 0.361234 |
Target: 5'- gGCGCGaGUugCuGC-UCGCGCGCGAg- -3' miRNA: 3'- -CGUGC-CGugGcUGaAGCGCGCGCUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 5069 | 0.72 | 0.25041 |
Target: 5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3' miRNA: 3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 14320 | 0.79 | 0.075686 |
Target: 5'- aGCGCGGCACCGuucgccgccuCUUCGauguagaCGCGCGACa -3' miRNA: 3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 13351 | 0.69 | 0.352875 |
Target: 5'- --uCGGCACgGugUaCGgGCGCGGCa -3' miRNA: 3'- cguGCCGUGgCugAaGCgCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 28988 | 0.82 | 0.046731 |
Target: 5'- uGCGCGGcCGCCGGgUcggcgugcgcaUCGCGCGCGGCUa -3' miRNA: 3'- -CGUGCC-GUGGCUgA-----------AGCGCGCGCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 9208 | 0.67 | 0.470712 |
Target: 5'- uCGCGGUgcgcACCGACUUCGCauccaucGCGCcGAa- -3' miRNA: 3'- cGUGCCG----UGGCUGAAGCG-------CGCG-CUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 19572 | 0.77 | 0.103374 |
Target: 5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3' miRNA: 3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 46923 | 0.67 | 0.452076 |
Target: 5'- cCGCGaGCGCCGcgaaGCcUCGCGCGCaGCc -3' miRNA: 3'- cGUGC-CGUGGC----UGaAGCGCGCGcUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 47490 | 0.68 | 0.441472 |
Target: 5'- cGCGCugaacgaGGCGCCGGC--CG-GCGCGACc -3' miRNA: 3'- -CGUG-------CCGUGGCUGaaGCgCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 6209 | 0.68 | 0.414211 |
Target: 5'- --uUGGCAUCGGCUUguucuucgCGUGCGCGAa- -3' miRNA: 3'- cguGCCGUGGCUGAA--------GCGCGCGCUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 2395 | 0.68 | 0.405053 |
Target: 5'- -gACGGCGCCGGCggucgccuggUCGCcGUacaGCGGCa -3' miRNA: 3'- cgUGCCGUGGCUGa---------AGCG-CG---CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 6752 | 0.69 | 0.37836 |
Target: 5'- cCACGGCGCCccggUCGCGCGCc--- -3' miRNA: 3'- cGUGCCGUGGcugaAGCGCGCGcuga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 11907 | 0.69 | 0.369729 |
Target: 5'- uCGCGGC-CCGGCa-UGCGCaGCGGCg -3' miRNA: 3'- cGUGCCGuGGCUGaaGCGCG-CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 45003 | 0.69 | 0.342215 |
Target: 5'- cCACGGCGCgcuguccggccgcuCGAC--CGCGCGUGGCg -3' miRNA: 3'- cGUGCCGUG--------------GCUGaaGCGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 48079 | 0.7 | 0.328628 |
Target: 5'- uGCuCGGUGCCGACgagGCGCagGCGGCa -3' miRNA: 3'- -CGuGCCGUGGCUGaagCGCG--CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 30071 | 0.71 | 0.290287 |
Target: 5'- aGCGCGggucgaugccguaGCGCCGACggaacgcgUCGaUGCGCGACc -3' miRNA: 3'- -CGUGC-------------CGUGGCUGa-------AGC-GCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 28755 | 0.72 | 0.25041 |
Target: 5'- uGCGCGaGCGCCGcgucgaccgcGCgggUCGCggcgGCGCGACUu -3' miRNA: 3'- -CGUGC-CGUGGC----------UGa--AGCG----CGCGCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 28236 | 0.73 | 0.198404 |
Target: 5'- uCACGGUgACCGugacgCGCGCGCGGCg -3' miRNA: 3'- cGUGCCG-UGGCugaa-GCGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 8988 | 0.74 | 0.188205 |
Target: 5'- uGCGCGGCggcgACCGACgcggCGUuCGCGGCUu -3' miRNA: 3'- -CGUGCCG----UGGCUGaa--GCGcGCGCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 25649 | 0.74 | 0.17847 |
Target: 5'- aGCGCGGUcgaaagcgucuuGCCGGCcgUCGCGaaCGCGGCg -3' miRNA: 3'- -CGUGCCG------------UGGCUGa-AGCGC--GCGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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