miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 30071 0.71 0.290287
Target:  5'- aGCGCGggucgaugccguaGCGCCGACggaacgcgUCGaUGCGCGACc -3'
miRNA:   3'- -CGUGC-------------CGUGGCUGa-------AGC-GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 28755 0.72 0.25041
Target:  5'- uGCGCGaGCGCCGcgucgaccgcGCgggUCGCggcgGCGCGACUu -3'
miRNA:   3'- -CGUGC-CGUGGC----------UGa--AGCG----CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 30402 0.74 0.183281
Target:  5'- aGCGacCGGCGCCGGaccgaaUUCGCGCgccguaGCGACUg -3'
miRNA:   3'- -CGU--GCCGUGGCUg-----AAGCGCG------CGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 23122 0.79 0.078077
Target:  5'- -gGCGGCACUGAUgUUGCGCGCgGACUg -3'
miRNA:   3'- cgUGCCGUGGCUGaAGCGCGCG-CUGA- -5'
16994 5' -58.2 NC_004333.2 + 8943 0.69 0.369729
Target:  5'- cGCGcCGGCGCUGucCaUCGCGUGCGcggGCUg -3'
miRNA:   3'- -CGU-GCCGUGGCu-GaAGCGCGCGC---UGA- -5'
16994 5' -58.2 NC_004333.2 + 29872 0.7 0.328628
Target:  5'- cGCGCGGUAgucgUCGGCgaagCGCuGCGCGAUc -3'
miRNA:   3'- -CGUGCCGU----GGCUGaa--GCG-CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 5069 0.72 0.25041
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 14320 0.79 0.075686
Target:  5'- aGCGCGGCACCGuucgccgccuCUUCGauguagaCGCGCGACa -3'
miRNA:   3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 48079 0.7 0.328628
Target:  5'- uGCuCGGUGCCGACgagGCGCagGCGGCa -3'
miRNA:   3'- -CGuGCCGUGGCUGaagCGCG--CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 28988 0.82 0.046731
Target:  5'- uGCGCGGcCGCCGGgUcggcgugcgcaUCGCGCGCGGCUa -3'
miRNA:   3'- -CGUGCC-GUGGCUgA-----------AGCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 15506 0.72 0.25041
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 41743 0.7 0.29825
Target:  5'- --uCGGCGCgGGCgacUCGCGCGCcgGGCUa -3'
miRNA:   3'- cguGCCGUGgCUGa--AGCGCGCG--CUGA- -5'
16994 5' -58.2 NC_004333.2 + 28236 0.73 0.198404
Target:  5'- uCACGGUgACCGugacgCGCGCGCGGCg -3'
miRNA:   3'- cGUGCCG-UGGCugaa-GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8988 0.74 0.188205
Target:  5'- uGCGCGGCggcgACCGACgcggCGUuCGCGGCUu -3'
miRNA:   3'- -CGUGCCG----UGGCUGaa--GCGcGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 25649 0.74 0.17847
Target:  5'- aGCGCGGUcgaaagcgucuuGCCGGCcgUCGCGaaCGCGGCg -3'
miRNA:   3'- -CGUGCCG------------UGGCUGa-AGCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19572 0.77 0.103374
Target:  5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3'
miRNA:   3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 6752 0.69 0.37836
Target:  5'- cCACGGCGCCccggUCGCGCGCc--- -3'
miRNA:   3'- cGUGCCGUGGcugaAGCGCGCGcuga -5'
16994 5' -58.2 NC_004333.2 + 11907 0.69 0.369729
Target:  5'- uCGCGGC-CCGGCa-UGCGCaGCGGCg -3'
miRNA:   3'- cGUGCCGuGGCUGaaGCGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38890 0.69 0.344654
Target:  5'- cGCACccGCGCCG-CUUCGCGCugauCGGCa -3'
miRNA:   3'- -CGUGc-CGUGGCuGAAGCGCGc---GCUGa -5'
16994 5' -58.2 NC_004333.2 + 40029 0.7 0.336572
Target:  5'- cGCGCGGCGCC-ACg--GCGCG-GACg -3'
miRNA:   3'- -CGUGCCGUGGcUGaagCGCGCgCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.