miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 8988 0.74 0.188205
Target:  5'- uGCGCGGCggcgACCGACgcggCGUuCGCGGCUu -3'
miRNA:   3'- -CGUGCCG----UGGCUGaa--GCGcGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 15432 0.74 0.188205
Target:  5'- -gGCGGCAgCGACc-UGCGCGUGACg -3'
miRNA:   3'- cgUGCCGUgGCUGaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 22241 0.74 0.188205
Target:  5'- cGC-CGGCAUCGACgcCGCGCGCa--- -3'
miRNA:   3'- -CGuGCCGUGGCUGaaGCGCGCGcuga -5'
16994 5' -58.2 NC_004333.2 + 20975 0.74 0.188205
Target:  5'- cGCGCGGCGCgGGCgagugggugcguUUCgaGCGCGUGGCa -3'
miRNA:   3'- -CGUGCCGUGgCUG------------AAG--CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30421 0.73 0.193246
Target:  5'- cGCGCGGCGCCGGCUgaaUGCuuGCGCa--- -3'
miRNA:   3'- -CGUGCCGUGGCUGAa--GCG--CGCGcuga -5'
16994 5' -58.2 NC_004333.2 + 11745 0.73 0.197883
Target:  5'- gGCAgccgacCGGCACCGACgUUCaccuugaGUGCGCGACc -3'
miRNA:   3'- -CGU------GCCGUGGCUG-AAG-------CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 28236 0.73 0.198404
Target:  5'- uCACGGUgACCGugacgCGCGCGCGGCg -3'
miRNA:   3'- cGUGCCG-UGGCugaa-GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11899 0.73 0.220251
Target:  5'- cGCAUGGCGCagGACgUCGCGUGUcGCUg -3'
miRNA:   3'- -CGUGCCGUGg-CUGaAGCGCGCGcUGA- -5'
16994 5' -58.2 NC_004333.2 + 10978 0.73 0.220251
Target:  5'- cGCGgaacuCGGCACCGGCgcgcgUCGUGaGCGGCg -3'
miRNA:   3'- -CGU-----GCCGUGGCUGa----AGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 20435 0.72 0.226025
Target:  5'- gGCuCGGCgGCCGACcagaUUCGCGCcGCGAUc -3'
miRNA:   3'- -CGuGCCG-UGGCUG----AAGCGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 18259 0.72 0.231926
Target:  5'- cGCAUGGCaaagcgGCCGAggaugcCGCGCGCGGCc -3'
miRNA:   3'- -CGUGCCG------UGGCUgaa---GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3294 0.72 0.231926
Target:  5'- aGCugGcGCAgCGAgUcgggcagguugUCGCGCGCGGCg -3'
miRNA:   3'- -CGugC-CGUgGCUgA-----------AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17930 0.72 0.231926
Target:  5'- uGUACGucaugaacGCACUGA--UCGCGCGCGGCg -3'
miRNA:   3'- -CGUGC--------CGUGGCUgaAGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19307 0.72 0.237956
Target:  5'- cGCGCGGCACgaGcGCUUgaGCGCGcCGGCUa -3'
miRNA:   3'- -CGUGCCGUGg-C-UGAAg-CGCGC-GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 37201 0.72 0.237956
Target:  5'- cGCGcCGGUGCCGAgUUC-CGCcGCGACg -3'
miRNA:   3'- -CGU-GCCGUGGCUgAAGcGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 25115 0.72 0.244117
Target:  5'- gGCACGGCGagcaCGGCggCGCGCacguucGCGGCc -3'
miRNA:   3'- -CGUGCCGUg---GCUGaaGCGCG------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 15506 0.72 0.25041
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 28755 0.72 0.25041
Target:  5'- uGCGCGaGCGCCGcgucgaccgcGCgggUCGCggcgGCGCGACUu -3'
miRNA:   3'- -CGUGC-CGUGGC----------UGa--AGCG----CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 5069 0.72 0.25041
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11613 0.71 0.256837
Target:  5'- -aACGcGCcgGCCGucACUUCGCGCGCGAa- -3'
miRNA:   3'- cgUGC-CG--UGGC--UGAAGCGCGCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.