miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 5391 0.66 0.532967
Target:  5'- aGC-CGGCGuuGACcugUUCGCGUucuucugccaucGCGGCa -3'
miRNA:   3'- -CGuGCCGUggCUG---AAGCGCG------------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38717 0.66 0.532967
Target:  5'- gGUGCGGCACCcGCgccUgGUGCGCagGACg -3'
miRNA:   3'- -CGUGCCGUGGcUGa--AgCGCGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 3309 0.66 0.529831
Target:  5'- cGCGCGGCGgCGcgcgguugaauuaaACUaUCGCuucGCGCGAUUc -3'
miRNA:   3'- -CGUGCCGUgGC--------------UGA-AGCG---CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 36883 0.66 0.523578
Target:  5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3'
miRNA:   3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30946 0.66 0.522539
Target:  5'- cGUcCGGCgauacGCCGGCggccgUCaaGCGCGACUc -3'
miRNA:   3'- -CGuGCCG-----UGGCUGa----AGcgCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 20605 0.66 0.522539
Target:  5'- gGCGCGGC-UCGGCcUCGCGCaGUcgGGCc -3'
miRNA:   3'- -CGUGCCGuGGCUGaAGCGCG-CG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 47051 0.66 0.522539
Target:  5'- uGCAgGGCuuccUCGAgUUUGCGCGCaACg -3'
miRNA:   3'- -CGUgCCGu---GGCUgAAGCGCGCGcUGa -5'
16994 5' -58.2 NC_004333.2 + 28740 0.66 0.51219
Target:  5'- ---aGGCGCUGGCa-CGCGCGUGAa- -3'
miRNA:   3'- cgugCCGUGGCUGaaGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 44570 0.66 0.51219
Target:  5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3'
miRNA:   3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 39562 0.66 0.51219
Target:  5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3'
miRNA:   3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5'
16994 5' -58.2 NC_004333.2 + 41768 0.66 0.51219
Target:  5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3'
miRNA:   3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5'
16994 5' -58.2 NC_004333.2 + 17782 0.66 0.51219
Target:  5'- gGUcCGGCGCCGgucGCUUCGaCGUuCGGCa -3'
miRNA:   3'- -CGuGCCGUGGC---UGAAGC-GCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 18108 0.66 0.51219
Target:  5'- cGCuACGGCAUCGACc-CGCGCuuUGGCa -3'
miRNA:   3'- -CG-UGCCGUGGCUGaaGCGCGc-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 39267 0.66 0.51219
Target:  5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 35383 0.66 0.51219
Target:  5'- -gACGGCACCGAgaUUG-GUGuCGACa -3'
miRNA:   3'- cgUGCCGUGGCUgaAGCgCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 21657 0.66 0.511159
Target:  5'- cGCACcugucggcGCGCCgGACUUCaucgacggaaaugGCGUGCGGCa -3'
miRNA:   3'- -CGUGc-------CGUGG-CUGAAG-------------CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 18176 0.66 0.508074
Target:  5'- uGC-CGGCguGCCGGgUgaugcgcucgucgUGCGCGCGGCa -3'
miRNA:   3'- -CGuGCCG--UGGCUgAa------------GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 26171 0.67 0.501927
Target:  5'- cGCcCGcGCGCUGA-UUCGCGC-CGACg -3'
miRNA:   3'- -CGuGC-CGUGGCUgAAGCGCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 16024 0.67 0.501927
Target:  5'- gGC-CGGCcuGCCGACagUCGCcGCGUucGACg -3'
miRNA:   3'- -CGuGCCG--UGGCUGa-AGCG-CGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 39260 0.67 0.501927
Target:  5'- -aGCGGCcgGCaGGCgcacgCGCGCGCGAUc -3'
miRNA:   3'- cgUGCCG--UGgCUGaa---GCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.