Results 21 - 40 of 170 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16994 | 5' | -58.2 | NC_004333.2 | + | 45892 | 0.66 | 0.532967 |
Target: 5'- cCACGGUACaCGACUUgcgacggcaaaCGCGCuGCG-CUc -3' miRNA: 3'- cGUGCCGUG-GCUGAA-----------GCGCG-CGCuGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 36528 | 0.66 | 0.542416 |
Target: 5'- uGCGCgacuacuGGCAgcgcuacuUCGACacgUUCGCGCGCGAa- -3' miRNA: 3'- -CGUG-------CCGU--------GGCUG---AAGCGCGCGCUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 17002 | 0.66 | 0.543469 |
Target: 5'- aGUACGGCgcGCCGuCUggGCG-GCGAUg -3' miRNA: 3'- -CGUGCCG--UGGCuGAagCGCgCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 36262 | 0.66 | 0.543469 |
Target: 5'- gGCGCGcGCGCCG-CUgcgcaugcCGgGCcGCGACg -3' miRNA: 3'- -CGUGC-CGUGGCuGAa-------GCgCG-CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 7128 | 0.66 | 0.543469 |
Target: 5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3' miRNA: 3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 754 | 0.66 | 0.554038 |
Target: 5'- --uUGGCGCCGGCga-GCG-GCGAUg -3' miRNA: 3'- cguGCCGUGGCUGaagCGCgCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 27734 | 0.66 | 0.554038 |
Target: 5'- --cCGGCGCaGGCUUCGCGcCGCcGAa- -3' miRNA: 3'- cguGCCGUGgCUGAAGCGC-GCG-CUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 43922 | 0.66 | 0.554038 |
Target: 5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3' miRNA: 3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 31097 | 0.66 | 0.554038 |
Target: 5'- gGCcCGGUucGCCGAUguucCG-GCGCGGCUg -3' miRNA: 3'- -CGuGCCG--UGGCUGaa--GCgCGCGCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 33689 | 0.66 | 0.532967 |
Target: 5'- aGgACGGCcaggcguCCGACUUCGUGUucGuCGGCg -3' miRNA: 3'- -CgUGCCGu------GGCUGAAGCGCG--C-GCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 36883 | 0.66 | 0.523578 |
Target: 5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3' miRNA: 3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 41768 | 0.66 | 0.51219 |
Target: 5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3' miRNA: 3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 39267 | 0.66 | 0.51219 |
Target: 5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3' miRNA: 3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 9482 | 0.66 | 0.532967 |
Target: 5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3' miRNA: 3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 38717 | 0.66 | 0.532967 |
Target: 5'- gGUGCGGCACCcGCgccUgGUGCGCagGACg -3' miRNA: 3'- -CGUGCCGUGGcUGa--AgCGCGCG--CUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 39562 | 0.66 | 0.51219 |
Target: 5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3' miRNA: 3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 44570 | 0.66 | 0.51219 |
Target: 5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3' miRNA: 3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 47451 | 0.67 | 0.457918 |
Target: 5'- cGCaACGGCAaucaaccucgccaCGGCgcUCGCGgGCGGCg -3' miRNA: 3'- -CG-UGCCGUg------------GCUGa-AGCGCgCGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 23192 | 0.67 | 0.461835 |
Target: 5'- -gGCGGCGCgGACgcagacgUUGCGCucGCGAUc -3' miRNA: 3'- cgUGCCGUGgCUGa------AGCGCG--CGCUGa -5' |
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16994 | 5' | -58.2 | NC_004333.2 | + | 30941 | 0.67 | 0.461835 |
Target: 5'- uGCGCgGGCagGCCGGCUUUGCcuuGCaguaGCGGCa -3' miRNA: 3'- -CGUG-CCG--UGGCUGAAGCG---CG----CGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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