miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 18564 0.65 0.561472
Target:  5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3'
miRNA:   3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36883 0.66 0.523578
Target:  5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3'
miRNA:   3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 44570 0.66 0.51219
Target:  5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3'
miRNA:   3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 39562 0.66 0.51219
Target:  5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3'
miRNA:   3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5'
16994 5' -58.2 NC_004333.2 + 39267 0.66 0.51219
Target:  5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 41768 0.66 0.51219
Target:  5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3'
miRNA:   3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5'
16994 5' -58.2 NC_004333.2 + 28740 0.66 0.51219
Target:  5'- ---aGGCGCUGGCa-CGCGCGUGAa- -3'
miRNA:   3'- cgugCCGUGGCUGaaGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 18108 0.66 0.51219
Target:  5'- cGCuACGGCAUCGACc-CGCGCuuUGGCa -3'
miRNA:   3'- -CG-UGCCGUGGCUGaaGCGCGc-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 17782 0.66 0.51219
Target:  5'- gGUcCGGCGCCGgucGCUUCGaCGUuCGGCa -3'
miRNA:   3'- -CGuGCCGUGGC---UGAAGC-GCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38717 0.66 0.532967
Target:  5'- gGUGCGGCACCcGCgccUgGUGCGCagGACg -3'
miRNA:   3'- -CGUGCCGUGGcUGa--AgCGCGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 9482 0.66 0.532967
Target:  5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3'
miRNA:   3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 33689 0.66 0.532967
Target:  5'- aGgACGGCcaggcguCCGACUUCGUGUucGuCGGCg -3'
miRNA:   3'- -CgUGCCGu------GGCUGAAGCGCG--C-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 43922 0.66 0.554038
Target:  5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3'
miRNA:   3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 27734 0.66 0.554038
Target:  5'- --cCGGCGCaGGCUUCGCGcCGCcGAa- -3'
miRNA:   3'- cguGCCGUGgCUGAAGCGC-GCG-CUga -5'
16994 5' -58.2 NC_004333.2 + 754 0.66 0.554038
Target:  5'- --uUGGCGCCGGCga-GCG-GCGAUg -3'
miRNA:   3'- cguGCCGUGGCUGaagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 7128 0.66 0.543469
Target:  5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3'
miRNA:   3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5'
16994 5' -58.2 NC_004333.2 + 36262 0.66 0.543469
Target:  5'- gGCGCGcGCGCCG-CUgcgcaugcCGgGCcGCGACg -3'
miRNA:   3'- -CGUGC-CGUGGCuGAa-------GCgCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17002 0.66 0.543469
Target:  5'- aGUACGGCgcGCCGuCUggGCG-GCGAUg -3'
miRNA:   3'- -CGUGCCG--UGGCuGAagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36528 0.66 0.542416
Target:  5'- uGCGCgacuacuGGCAgcgcuacuUCGACacgUUCGCGCGCGAa- -3'
miRNA:   3'- -CGUG-------CCGU--------GGCUG---AAGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 45892 0.66 0.532967
Target:  5'- cCACGGUACaCGACUUgcgacggcaaaCGCGCuGCG-CUc -3'
miRNA:   3'- cGUGCCGUG-GCUGAA-----------GCGCG-CGCuGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.