miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 157 0.66 0.554038
Target:  5'- gGCGCGaGCACaCGAUcggCGCcugGCGCGAg- -3'
miRNA:   3'- -CGUGC-CGUG-GCUGaa-GCG---CGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 754 0.66 0.554038
Target:  5'- --uUGGCGCCGGCga-GCG-GCGAUg -3'
miRNA:   3'- cguGCCGUGGCUGaagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 1123 0.7 0.320824
Target:  5'- cGCGaaguCGGUGCCGuGCU--GCGCGCGACg -3'
miRNA:   3'- -CGU----GCCGUGGC-UGAagCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 1232 0.7 0.328628
Target:  5'- gGCGC-GCGCCGcCUUggcUGCGCGCGAg- -3'
miRNA:   3'- -CGUGcCGUGGCuGAA---GCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 2395 0.68 0.405053
Target:  5'- -gACGGCGCCGGCggucgccuggUCGCcGUacaGCGGCa -3'
miRNA:   3'- cgUGCCGUGGCUGa---------AGCG-CG---CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 2953 0.68 0.44243
Target:  5'- aGguCGGCACCGACaa-GCaCGUGGCc -3'
miRNA:   3'- -CguGCCGUGGCUGaagCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3003 0.67 0.452076
Target:  5'- cGC-CGGCGCguccgccgCGACguaGCGCGCGAa- -3'
miRNA:   3'- -CGuGCCGUG--------GCUGaagCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 3018 0.83 0.038198
Target:  5'- aGCGCGGCcaguaucggGCCGACUUCGgGCGaCGACa -3'
miRNA:   3'- -CGUGCCG---------UGGCUGAAGCgCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 3231 0.78 0.097763
Target:  5'- uGCGCGcGCaggauagcuGCCGACUUcuucggCGCGCGCGACg -3'
miRNA:   3'- -CGUGC-CG---------UGGCUGAA------GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3294 0.72 0.231926
Target:  5'- aGCugGcGCAgCGAgUcgggcagguugUCGCGCGCGGCg -3'
miRNA:   3'- -CGugC-CGUgGCUgA-----------AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3309 0.66 0.529831
Target:  5'- cGCGCGGCGgCGcgcgguugaauuaaACUaUCGCuucGCGCGAUUc -3'
miRNA:   3'- -CGUGCCGUgGC--------------UGA-AGCG---CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 3551 0.67 0.471704
Target:  5'- aCGCGGUGCCG-CgcaGCGCGuCGGCc -3'
miRNA:   3'- cGUGCCGUGGCuGaagCGCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 5069 0.72 0.25041
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 5391 0.66 0.532967
Target:  5'- aGC-CGGCGuuGACcugUUCGCGUucuucugccaucGCGGCa -3'
miRNA:   3'- -CGuGCCGUggCUG---AAGCGCG------------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 6209 0.68 0.414211
Target:  5'- --uUGGCAUCGGCUUguucuucgCGUGCGCGAa- -3'
miRNA:   3'- cguGCCGUGGCUGAA--------GCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 6752 0.69 0.37836
Target:  5'- cCACGGCGCCccggUCGCGCGCc--- -3'
miRNA:   3'- cGUGCCGUGGcugaAGCGCGCGcuga -5'
16994 5' -58.2 NC_004333.2 + 7128 0.66 0.543469
Target:  5'- -gGCGGCGCgaaacguguCGACgaUCGUGCGCGcCg -3'
miRNA:   3'- cgUGCCGUG---------GCUGa-AGCGCGCGCuGa -5'
16994 5' -58.2 NC_004333.2 + 7400 0.68 0.396024
Target:  5'- cGCA-GGuCGCCGugUccuugccuUCGaCGCGCGGCg -3'
miRNA:   3'- -CGUgCC-GUGGCugA--------AGC-GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8221 0.66 0.543469
Target:  5'- uGCGCGGCaggaugacGCCGGCc---CGCGCGAg- -3'
miRNA:   3'- -CGUGCCG--------UGGCUGaagcGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 8358 0.67 0.491755
Target:  5'- uCACGGCAgCCGGgUaUGCGCGUucgGACg -3'
miRNA:   3'- cGUGCCGU-GGCUgAaGCGCGCG---CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.