miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 48079 0.7 0.328628
Target:  5'- uGCuCGGUGCCGACgagGCGCagGCGGCa -3'
miRNA:   3'- -CGuGCCGUGGCUGaagCGCG--CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 48014 0.67 0.491755
Target:  5'- cGCGCcaGGCGCCGAUcgugugcUCGCGCcgaaucaCGACUa -3'
miRNA:   3'- -CGUG--CCGUGGCUGa------AGCGCGc------GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 47714 0.66 0.543469
Target:  5'- uCACGcuCGCCGGCacgUCGCGCGCcguGGCc -3'
miRNA:   3'- cGUGCc-GUGGCUGa--AGCGCGCG---CUGa -5'
16994 5' -58.2 NC_004333.2 + 47490 0.68 0.441472
Target:  5'- cGCGCugaacgaGGCGCCGGC--CG-GCGCGACc -3'
miRNA:   3'- -CGUG-------CCGUGGCUGaaGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 47451 0.67 0.457918
Target:  5'- cGCaACGGCAaucaaccucgccaCGGCgcUCGCGgGCGGCg -3'
miRNA:   3'- -CG-UGCCGUg------------GCUGa-AGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 47193 0.66 0.554038
Target:  5'- cGCGCaGCACgaGGCacaagUCGC-CGCGACg -3'
miRNA:   3'- -CGUGcCGUGg-CUGa----AGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 47058 1.1 0.000419
Target:  5'- aGCACGGCACCGACUUCGCGCGCGACUg -3'
miRNA:   3'- -CGUGCCGUGGCUGAAGCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 47051 0.66 0.522539
Target:  5'- uGCAgGGCuuccUCGAgUUUGCGCGCaACg -3'
miRNA:   3'- -CGUgCCGu---GGCUgAAGCGCGCGcUGa -5'
16994 5' -58.2 NC_004333.2 + 46923 0.67 0.452076
Target:  5'- cCGCGaGCGCCGcgaaGCcUCGCGCGCaGCc -3'
miRNA:   3'- cGUGC-CGUGGC----UGaAGCGCGCGcUGa -5'
16994 5' -58.2 NC_004333.2 + 45892 0.66 0.532967
Target:  5'- cCACGGUACaCGACUUgcgacggcaaaCGCGCuGCG-CUc -3'
miRNA:   3'- cGUGCCGUG-GCUGAA-----------GCGCG-CGCuGA- -5'
16994 5' -58.2 NC_004333.2 + 45248 0.74 0.169185
Target:  5'- uGUcCGGCAUCGAag-CGCGCGUGGCg -3'
miRNA:   3'- -CGuGCCGUGGCUgaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 45003 0.69 0.342215
Target:  5'- cCACGGCGCgcuguccggccgcuCGAC--CGCGCGUGGCg -3'
miRNA:   3'- cGUGCCGUG--------------GCUGaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 44611 0.68 0.405053
Target:  5'- cGCACuauguGGUcgGCCGACg-CGCuGCGCGGCa -3'
miRNA:   3'- -CGUG-----CCG--UGGCUGaaGCG-CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 44570 0.66 0.51219
Target:  5'- cGCA-GGCGcCCGACUgggcgaauacgaUCGC-CGCGAUg -3'
miRNA:   3'- -CGUgCCGU-GGCUGA------------AGCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 44085 0.68 0.423495
Target:  5'- cGCGCccgcucgguaagGGCGgCGACUUCGCaucguuuCGCGGCg -3'
miRNA:   3'- -CGUG------------CCGUgGCUGAAGCGc------GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 43922 0.66 0.554038
Target:  5'- ---gGGCGCaCGAa--CGUGCGCGGCa -3'
miRNA:   3'- cgugCCGUG-GCUgaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 43879 0.68 0.405053
Target:  5'- uCGCGGCACUGcaaaucCUugUCGCacuGCGCGACa -3'
miRNA:   3'- cGUGCCGUGGCu-----GA--AGCG---CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 43319 0.78 0.100531
Target:  5'- gGCAgCGGCAUCGGCacggCGCGCGCGuACg -3'
miRNA:   3'- -CGU-GCCGUGGCUGaa--GCGCGCGC-UGa -5'
16994 5' -58.2 NC_004333.2 + 42973 0.71 0.263397
Target:  5'- uGCgACGGUGCCGACgcCGCGCcugcagGCGAUg -3'
miRNA:   3'- -CG-UGCCGUGGCUGaaGCGCG------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 42216 0.66 0.543469
Target:  5'- -uGCGGC-UCGACUUCGacCGCaCGACg -3'
miRNA:   3'- cgUGCCGuGGCUGAAGC--GCGcGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.