miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 41768 0.66 0.51219
Target:  5'- cGUACGGCA-CGACcgcaugCGCGUGgGAUUc -3'
miRNA:   3'- -CGUGCCGUgGCUGaa----GCGCGCgCUGA- -5'
16994 5' -58.2 NC_004333.2 + 41743 0.7 0.29825
Target:  5'- --uCGGCGCgGGCgacUCGCGCGCcgGGCUa -3'
miRNA:   3'- cguGCCGUGgCUGa--AGCGCGCG--CUGA- -5'
16994 5' -58.2 NC_004333.2 + 41577 0.7 0.336572
Target:  5'- -uGCGGCGCUgGGCggCGCGCcGUGGCg -3'
miRNA:   3'- cgUGCCGUGG-CUGaaGCGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 40852 0.67 0.491755
Target:  5'- cGCGCcuucuGGuCGCCGGCgaugGuCGCGCGACUc -3'
miRNA:   3'- -CGUG-----CC-GUGGCUGaag-C-GCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 40029 0.7 0.336572
Target:  5'- cGCGCGGCGCC-ACg--GCGCG-GACg -3'
miRNA:   3'- -CGUGCCGUGGcUGaagCGCGCgCUGa -5'
16994 5' -58.2 NC_004333.2 + 39562 0.66 0.51219
Target:  5'- uCGC-GCAUCGGCUUCGUGCaucGCGAa- -3'
miRNA:   3'- cGUGcCGUGGCUGAAGCGCG---CGCUga -5'
16994 5' -58.2 NC_004333.2 + 39267 0.66 0.51219
Target:  5'- cGCGuCGcGCAUCGACgccaaccUCGCcaagaucaagguGCGCGGCUa -3'
miRNA:   3'- -CGU-GC-CGUGGCUGa------AGCG------------CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 39260 0.67 0.501927
Target:  5'- -aGCGGCcgGCaGGCgcacgCGCGCGCGAUc -3'
miRNA:   3'- cgUGCCG--UGgCUGaa---GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 39065 0.7 0.336572
Target:  5'- uGCuCGGCGgCGACaUUGCGCuCGACa -3'
miRNA:   3'- -CGuGCCGUgGCUGaAGCGCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38890 0.69 0.344654
Target:  5'- cGCACccGCGCCG-CUUCGCGCugauCGGCa -3'
miRNA:   3'- -CGUGc-CGUGGCuGAAGCGCGc---GCUGa -5'
16994 5' -58.2 NC_004333.2 + 38824 0.69 0.37836
Target:  5'- ---aGGC-CCGACgcCGCGCGcCGACg -3'
miRNA:   3'- cgugCCGuGGCUGaaGCGCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 38717 0.66 0.532967
Target:  5'- gGUGCGGCACCcGCgccUgGUGCGCagGACg -3'
miRNA:   3'- -CGUGCCGUGGcUGa--AgCGCGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 38253 0.7 0.31316
Target:  5'- uGCGCGGCgACCuGC-UCGUGUGgGACg -3'
miRNA:   3'- -CGUGCCG-UGGcUGaAGCGCGCgCUGa -5'
16994 5' -58.2 NC_004333.2 + 37962 0.71 0.262074
Target:  5'- cGCGCaGCuuugauGCCGACggccgcaugcgCGUGCGCGACUg -3'
miRNA:   3'- -CGUGcCG------UGGCUGaa---------GCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 37667 0.67 0.495812
Target:  5'- aGCGCGcGCccgacccgcucgucgGCCGGCccgGCGCGUGGCg -3'
miRNA:   3'- -CGUGC-CG---------------UGGCUGaagCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 37508 0.68 0.405053
Target:  5'- -aGCGuGCACCGGCcggCGCGacCGUGACg -3'
miRNA:   3'- cgUGC-CGUGGCUGaa-GCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 37201 0.72 0.237956
Target:  5'- cGCGcCGGUGCCGAgUUC-CGCcGCGACg -3'
miRNA:   3'- -CGU-GCCGUGGCUgAAGcGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 37160 0.67 0.501927
Target:  5'- cGUGCGGCAuCCcGCagCGCG-GCGACa -3'
miRNA:   3'- -CGUGCCGU-GGcUGaaGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36883 0.66 0.523578
Target:  5'- gGCgACGGCGCaguucaacaGCGCGCGGCa -3'
miRNA:   3'- -CG-UGCCGUGgcugaag--CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36825 0.74 0.181826
Target:  5'- aGCGCGGCAaggugaCGACgaaccgcgccgccuUcaUCGCGCGCGACc -3'
miRNA:   3'- -CGUGCCGUg-----GCUG--------------A--AGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.