miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 8650 0.74 0.17847
Target:  5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3'
miRNA:   3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8943 0.69 0.369729
Target:  5'- cGCGcCGGCGCUGucCaUCGCGUGCGcggGCUg -3'
miRNA:   3'- -CGU-GCCGUGGCu-GaAGCGCGCGC---UGA- -5'
16994 5' -58.2 NC_004333.2 + 8988 0.74 0.188205
Target:  5'- uGCGCGGCggcgACCGACgcggCGUuCGCGGCUu -3'
miRNA:   3'- -CGUGCCG----UGGCUGaa--GCGcGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 9106 0.74 0.169185
Target:  5'- cGCACGGCGCaCGAg-UCGCGCGU-ACUc -3'
miRNA:   3'- -CGUGCCGUG-GCUgaAGCGCGCGcUGA- -5'
16994 5' -58.2 NC_004333.2 + 9208 0.67 0.470712
Target:  5'- uCGCGGUgcgcACCGACUUCGCauccaucGCGCcGAa- -3'
miRNA:   3'- cGUGCCG----UGGCUGAAGCG-------CGCG-CUga -5'
16994 5' -58.2 NC_004333.2 + 9261 0.67 0.481679
Target:  5'- cGUGCGGCAuaGcCUUCGUGCGgauuCGGCUu -3'
miRNA:   3'- -CGUGCCGUggCuGAAGCGCGC----GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 9482 0.66 0.532967
Target:  5'- -gGCGGCugCGGgaaUUUCaGCGCgGCGGCc -3'
miRNA:   3'- cgUGCCGugGCU---GAAG-CGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9557 0.67 0.491755
Target:  5'- -uGCGGCGCCGA--UCGUG-GCGAg- -3'
miRNA:   3'- cgUGCCGUGGCUgaAGCGCgCGCUga -5'
16994 5' -58.2 NC_004333.2 + 9606 0.76 0.118753
Target:  5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3'
miRNA:   3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 10133 0.68 0.423495
Target:  5'- aGguCGGCauaGCCGACcacUUCGCGacCGCGAUa -3'
miRNA:   3'- -CguGCCG---UGGCUG---AAGCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 10525 0.68 0.402331
Target:  5'- gGCGCGcGCucgaugaaugucugAuCCGGCgggaugUCGCGCGUGACa -3'
miRNA:   3'- -CGUGC-CG--------------U-GGCUGa-----AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 10780 0.68 0.44243
Target:  5'- cCGCGaGCGCCGACguaggaCGaugaggacggcCGCGCGACg -3'
miRNA:   3'- cGUGC-CGUGGCUGaa----GC-----------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 10978 0.73 0.220251
Target:  5'- cGCGgaacuCGGCACCGGCgcgcgUCGUGaGCGGCg -3'
miRNA:   3'- -CGU-----GCCGUGGCUGa----AGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11078 0.69 0.344654
Target:  5'- cGUGCGGCccauuCCGGgaaugaUCGUGCGCGACg -3'
miRNA:   3'- -CGUGCCGu----GGCUga----AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11209 0.67 0.481679
Target:  5'- cCGCGcGCACgUGA-UUCGgGCGCGGCUc -3'
miRNA:   3'- cGUGC-CGUG-GCUgAAGCgCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 11292 0.71 0.283896
Target:  5'- cGCGCGcuguugaacuGCGCCGucgccuuguugcACUggUCGCGCGCGAUg -3'
miRNA:   3'- -CGUGC----------CGUGGC------------UGA--AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11613 0.71 0.256837
Target:  5'- -aACGcGCcgGCCGucACUUCGCGCGCGAa- -3'
miRNA:   3'- cgUGC-CG--UGGC--UGAAGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 11745 0.73 0.197883
Target:  5'- gGCAgccgacCGGCACCGACgUUCaccuugaGUGCGCGACc -3'
miRNA:   3'- -CGU------GCCGUGGCUG-AAG-------CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11899 0.73 0.220251
Target:  5'- cGCAUGGCGCagGACgUCGCGUGUcGCUg -3'
miRNA:   3'- -CGUGCCGUGg-CUGaAGCGCGCGcUGA- -5'
16994 5' -58.2 NC_004333.2 + 11907 0.69 0.369729
Target:  5'- uCGCGGC-CCGGCa-UGCGCaGCGGCg -3'
miRNA:   3'- cGUGCCGuGGCUGaaGCGCG-CGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.