miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 12284 0.84 0.035027
Target:  5'- aCACGGCACCGGCggCGCGCauuGCGGCg -3'
miRNA:   3'- cGUGCCGUGGCUGaaGCGCG---CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13147 0.68 0.423495
Target:  5'- aGCGCGucaCGCCGAUggugUUCG-GCGCGACc -3'
miRNA:   3'- -CGUGCc--GUGGCUG----AAGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13173 0.68 0.405053
Target:  5'- aGCAUGuCGCCGACU--GgGCGCGAUa -3'
miRNA:   3'- -CGUGCcGUGGCUGAagCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13351 0.69 0.352875
Target:  5'- --uCGGCACgGugUaCGgGCGCGGCa -3'
miRNA:   3'- cguGCCGUGgCugAaGCgCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13763 0.67 0.501927
Target:  5'- cGC-CGcGCGCCG-C-UCGCGCgGCGugUa -3'
miRNA:   3'- -CGuGC-CGUGGCuGaAGCGCG-CGCugA- -5'
16994 5' -58.2 NC_004333.2 + 13895 0.74 0.17847
Target:  5'- gGC-CGGCACgGGCUgCGCG-GCGGCUg -3'
miRNA:   3'- -CGuGCCGUGgCUGAaGCGCgCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 13971 0.67 0.481679
Target:  5'- -gGCGGCgGCCGG---UGCGCGCGAgCUg -3'
miRNA:   3'- cgUGCCG-UGGCUgaaGCGCGCGCU-GA- -5'
16994 5' -58.2 NC_004333.2 + 14114 0.71 0.279697
Target:  5'- uGCGCGGCugCGGCgaacacggggaguggUauuUCGUuagGCGCGACUa -3'
miRNA:   3'- -CGUGCCGugGCUG---------------A---AGCG---CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 14320 0.79 0.075686
Target:  5'- aGCGCGGCACCGuucgccgccuCUUCGauguagaCGCGCGACa -3'
miRNA:   3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 14871 0.68 0.423495
Target:  5'- cGCGcCGGUuggcucgaugcgGCCGACgcaacgCGCGCGCucGGCUg -3'
miRNA:   3'- -CGU-GCCG------------UGGCUGaa----GCGCGCG--CUGA- -5'
16994 5' -58.2 NC_004333.2 + 15432 0.74 0.188205
Target:  5'- -gGCGGCAgCGACc-UGCGCGUGACg -3'
miRNA:   3'- cgUGCCGUgGCUGaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 15506 0.72 0.25041
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 15807 0.71 0.276926
Target:  5'- aCGCGGCGCUGAacgUCGUGCuGCGcACg -3'
miRNA:   3'- cGUGCCGUGGCUga-AGCGCG-CGC-UGa -5'
16994 5' -58.2 NC_004333.2 + 16024 0.67 0.501927
Target:  5'- gGC-CGGCcuGCCGACagUCGCcGCGUucGACg -3'
miRNA:   3'- -CGuGCCG--UGGCUGa-AGCG-CGCG--CUGa -5'
16994 5' -58.2 NC_004333.2 + 16539 0.68 0.414211
Target:  5'- aGCAgauCGGC--CGACUguucaCGCGCGCGGCc -3'
miRNA:   3'- -CGU---GCCGugGCUGAa----GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 16942 0.69 0.352875
Target:  5'- gGCGCuGCGCCGcGCggccgUCGCGC-CGGCa -3'
miRNA:   3'- -CGUGcCGUGGC-UGa----AGCGCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17002 0.66 0.543469
Target:  5'- aGUACGGCgcGCCGuCUggGCG-GCGAUg -3'
miRNA:   3'- -CGUGCCG--UGGCuGAagCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17036 0.71 0.291004
Target:  5'- cGgGCGGCgaugcauucGCCGGgcUCGCGCGCGAg- -3'
miRNA:   3'- -CgUGCCG---------UGGCUgaAGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 17782 0.66 0.51219
Target:  5'- gGUcCGGCGCCGgucGCUUCGaCGUuCGGCa -3'
miRNA:   3'- -CGuGCCGUGGC---UGAAGC-GCGcGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17930 0.72 0.231926
Target:  5'- uGUACGucaugaacGCACUGA--UCGCGCGCGGCg -3'
miRNA:   3'- -CGUGC--------CGUGGCUgaAGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.