miRNA display CGI


Results 41 - 60 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 37962 0.71 0.262074
Target:  5'- cGCGCaGCuuugauGCCGACggccgcaugcgCGUGCGCGACUg -3'
miRNA:   3'- -CGUGcCG------UGGCUGaa---------GCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 42973 0.71 0.263397
Target:  5'- uGCgACGGUGCCGACgcCGCGCcugcagGCGAUg -3'
miRNA:   3'- -CG-UGCCGUGGCUGaaGCGCG------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 27437 0.71 0.263397
Target:  5'- cGCGuCGGCGauguCCGGCagCGCGCGCGcCg -3'
miRNA:   3'- -CGU-GCCGU----GGCUGaaGCGCGCGCuGa -5'
16994 5' -58.2 NC_004333.2 + 15807 0.71 0.276926
Target:  5'- aCGCGGCGCUGAacgUCGUGCuGCGcACg -3'
miRNA:   3'- cGUGCCGUGGCUga-AGCGCG-CGC-UGa -5'
16994 5' -58.2 NC_004333.2 + 14114 0.71 0.279697
Target:  5'- uGCGCGGCugCGGCgaacacggggaguggUauuUCGUuagGCGCGACUa -3'
miRNA:   3'- -CGUGCCGugGCUG---------------A---AGCG---CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 11292 0.71 0.283896
Target:  5'- cGCGCGcuguugaacuGCGCCGucgccuuguugcACUggUCGCGCGCGAUg -3'
miRNA:   3'- -CGUGC----------CGUGGC------------UGA--AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30071 0.71 0.290287
Target:  5'- aGCGCGggucgaugccguaGCGCCGACggaacgcgUCGaUGCGCGACc -3'
miRNA:   3'- -CGUGC-------------CGUGGCUGa-------AGC-GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 17036 0.71 0.291004
Target:  5'- cGgGCGGCgaugcauucGCCGGgcUCGCGCGCGAg- -3'
miRNA:   3'- -CgUGCCG---------UGGCUgaAGCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 41743 0.7 0.29825
Target:  5'- --uCGGCGCgGGCgacUCGCGCGCcgGGCUa -3'
miRNA:   3'- cguGCCGUGgCUGa--AGCGCGCG--CUGA- -5'
16994 5' -58.2 NC_004333.2 + 24676 0.7 0.303405
Target:  5'- uGUACGcuGCGCCGAUcaacugcaugccgaUccgCGCGCGCGACa -3'
miRNA:   3'- -CGUGC--CGUGGCUG--------------Aa--GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 21813 0.7 0.305635
Target:  5'- -gACGGCAgCGACgucaucaaCGUGCGUGGCg -3'
miRNA:   3'- cgUGCCGUgGCUGaa------GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 38253 0.7 0.31316
Target:  5'- uGCGCGGCgACCuGC-UCGUGUGgGACg -3'
miRNA:   3'- -CGUGCCG-UGGcUGaAGCGCGCgCUGa -5'
16994 5' -58.2 NC_004333.2 + 1123 0.7 0.320824
Target:  5'- cGCGaaguCGGUGCCGuGCU--GCGCGCGACg -3'
miRNA:   3'- -CGU----GCCGUGGC-UGAagCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 23114 0.7 0.320824
Target:  5'- -aACGGCAgCGACagCGCgaucaacuacgGCGCGACg -3'
miRNA:   3'- cgUGCCGUgGCUGaaGCG-----------CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 48079 0.7 0.328628
Target:  5'- uGCuCGGUGCCGACgagGCGCagGCGGCa -3'
miRNA:   3'- -CGuGCCGUGGCUGaagCGCG--CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 1232 0.7 0.328628
Target:  5'- gGCGC-GCGCCGcCUUggcUGCGCGCGAg- -3'
miRNA:   3'- -CGUGcCGUGGCuGAA---GCGCGCGCUga -5'
16994 5' -58.2 NC_004333.2 + 29872 0.7 0.328628
Target:  5'- cGCGCGGUAgucgUCGGCgaagCGCuGCGCGAUc -3'
miRNA:   3'- -CGUGCCGU----GGCUGaa--GCG-CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19145 0.7 0.329416
Target:  5'- gGCGCGGUGCuCGcGCUgguuaucgugcuagcCGCGCGCGAUg -3'
miRNA:   3'- -CGUGCCGUG-GC-UGAa--------------GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 41577 0.7 0.336572
Target:  5'- -uGCGGCGCUgGGCggCGCGCcGUGGCg -3'
miRNA:   3'- cgUGCCGUGG-CUGaaGCGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 25596 0.7 0.336572
Target:  5'- aCACGaGCGCCGAUgUCGUGaCGaCGGCg -3'
miRNA:   3'- cGUGC-CGUGGCUGaAGCGC-GC-GCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.