miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 12284 0.84 0.035027
Target:  5'- aCACGGCACCGGCggCGCGCauuGCGGCg -3'
miRNA:   3'- cGUGCCGUGGCUGaaGCGCG---CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 5069 0.72 0.25041
Target:  5'- gGCGCGGCGCUGAacagcgUCagcagGUGUGCGACg -3'
miRNA:   3'- -CGUGCCGUGGCUga----AG-----CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 28755 0.72 0.25041
Target:  5'- uGCGCGaGCGCCGcgucgaccgcGCgggUCGCggcgGCGCGACUu -3'
miRNA:   3'- -CGUGC-CGUGGC----------UGa--AGCG----CGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 18564 0.65 0.561472
Target:  5'- gGCGCGGCGgcgaauCCGAacccgUUCGUgcaacaaacgaccgGCGCGGCa -3'
miRNA:   3'- -CGUGCCGU------GGCUg----AAGCG--------------CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 19572 0.77 0.103374
Target:  5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3'
miRNA:   3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9606 0.76 0.118753
Target:  5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3'
miRNA:   3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 25649 0.74 0.17847
Target:  5'- aGCGCGGUcgaaagcgucuuGCCGGCcgUCGCGaaCGCGGCg -3'
miRNA:   3'- -CGUGCCG------------UGGCUGa-AGCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8650 0.74 0.17847
Target:  5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3'
miRNA:   3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8988 0.74 0.188205
Target:  5'- uGCGCGGCggcgACCGACgcggCGUuCGCGGCUu -3'
miRNA:   3'- -CGUGCCG----UGGCUGaa--GCGcGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 25115 0.72 0.244117
Target:  5'- gGCACGGCGagcaCGGCggCGCGCacguucGCGGCc -3'
miRNA:   3'- -CGUGCCGUg---GCUGaaGCGCG------CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 11745 0.73 0.197883
Target:  5'- gGCAgccgacCGGCACCGACgUUCaccuugaGUGCGCGACc -3'
miRNA:   3'- -CGU------GCCGUGGCUG-AAG-------CGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30402 0.74 0.183281
Target:  5'- aGCGacCGGCGCCGGaccgaaUUCGCGCgccguaGCGACUg -3'
miRNA:   3'- -CGU--GCCGUGGCUg-----AAGCGCG------CGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 28988 0.82 0.046731
Target:  5'- uGCGCGGcCGCCGGgUcggcgugcgcaUCGCGCGCGGCUa -3'
miRNA:   3'- -CGUGCC-GUGGCUgA-----------AGCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 28236 0.73 0.198404
Target:  5'- uCACGGUgACCGugacgCGCGCGCGGCg -3'
miRNA:   3'- cGUGCCG-UGGCugaa-GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 14320 0.79 0.075686
Target:  5'- aGCGCGGCACCGuucgccgccuCUUCGauguagaCGCGCGACa -3'
miRNA:   3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13895 0.74 0.17847
Target:  5'- gGC-CGGCACgGGCUgCGCG-GCGGCUg -3'
miRNA:   3'- -CGuGCCGUGgCUGAaGCGCgCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 37201 0.72 0.237956
Target:  5'- cGCGcCGGUGCCGAgUUC-CGCcGCGACg -3'
miRNA:   3'- -CGU-GCCGUGGCUgAAGcGCG-CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 15506 0.72 0.25041
Target:  5'- cGCgGCGGuCACCGGCggCGCgucaaGCGCGAUg -3'
miRNA:   3'- -CG-UGCC-GUGGCUGaaGCG-----CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 23122 0.79 0.078077
Target:  5'- -gGCGGCACUGAUgUUGCGCGCgGACUg -3'
miRNA:   3'- cgUGCCGUGGCUGaAGCGCGCG-CUGA- -5'
16994 5' -58.2 NC_004333.2 + 45248 0.74 0.169185
Target:  5'- uGUcCGGCAUCGAag-CGCGCGUGGCg -3'
miRNA:   3'- -CGuGCCGUGGCUgaaGCGCGCGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.