miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16994 5' -58.2 NC_004333.2 + 47058 1.1 0.000419
Target:  5'- aGCACGGCACCGACUUCGCGCGCGACUg -3'
miRNA:   3'- -CGUGCCGUGGCUGAAGCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 12284 0.84 0.035027
Target:  5'- aCACGGCACCGGCggCGCGCauuGCGGCg -3'
miRNA:   3'- cGUGCCGUGGCUGaaGCGCG---CGCUGa -5'
16994 5' -58.2 NC_004333.2 + 3018 0.83 0.038198
Target:  5'- aGCGCGGCcaguaucggGCCGACUUCGgGCGaCGACa -3'
miRNA:   3'- -CGUGCCG---------UGGCUGAAGCgCGC-GCUGa -5'
16994 5' -58.2 NC_004333.2 + 28988 0.82 0.046731
Target:  5'- uGCGCGGcCGCCGGgUcggcgugcgcaUCGCGCGCGGCUa -3'
miRNA:   3'- -CGUGCC-GUGGCUgA-----------AGCGCGCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 14320 0.79 0.075686
Target:  5'- aGCGCGGCACCGuucgccgccuCUUCGauguagaCGCGCGACa -3'
miRNA:   3'- -CGUGCCGUGGCu---------GAAGC-------GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 23122 0.79 0.078077
Target:  5'- -gGCGGCACUGAUgUUGCGCGCgGACUg -3'
miRNA:   3'- cgUGCCGUGGCUGaAGCGCGCG-CUGA- -5'
16994 5' -58.2 NC_004333.2 + 3231 0.78 0.097763
Target:  5'- uGCGCGcGCaggauagcuGCCGACUUcuucggCGCGCGCGACg -3'
miRNA:   3'- -CGUGC-CG---------UGGCUGAA------GCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 43319 0.78 0.100531
Target:  5'- gGCAgCGGCAUCGGCacggCGCGCGCGuACg -3'
miRNA:   3'- -CGU-GCCGUGGCUGaa--GCGCGCGC-UGa -5'
16994 5' -58.2 NC_004333.2 + 19572 0.77 0.103374
Target:  5'- gGCGCGGCACaaggGGaaUCGCGCGCGAUc -3'
miRNA:   3'- -CGUGCCGUGg---CUgaAGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 34288 0.77 0.112361
Target:  5'- cGCGCaGCccgugccgGCCGACUUCGCgcgGCGCGGCg -3'
miRNA:   3'- -CGUGcCG--------UGGCUGAAGCG---CGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9606 0.76 0.118753
Target:  5'- gGCGCGGCAUCGGCcggUUGCGCacCGGCUg -3'
miRNA:   3'- -CGUGCCGUGGCUGa--AGCGCGc-GCUGA- -5'
16994 5' -58.2 NC_004333.2 + 18784 0.75 0.156068
Target:  5'- -aACGGCguuacGCCGuuuGCUUCGCGgGCGACg -3'
miRNA:   3'- cgUGCCG-----UGGC---UGAAGCGCgCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 9106 0.74 0.169185
Target:  5'- cGCACGGCGCaCGAg-UCGCGCGU-ACUc -3'
miRNA:   3'- -CGUGCCGUG-GCUgaAGCGCGCGcUGA- -5'
16994 5' -58.2 NC_004333.2 + 45248 0.74 0.169185
Target:  5'- uGUcCGGCAUCGAag-CGCGCGUGGCg -3'
miRNA:   3'- -CGuGCCGUGGCUgaaGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 13895 0.74 0.17847
Target:  5'- gGC-CGGCACgGGCUgCGCG-GCGGCUg -3'
miRNA:   3'- -CGuGCCGUGgCUGAaGCGCgCGCUGA- -5'
16994 5' -58.2 NC_004333.2 + 25649 0.74 0.17847
Target:  5'- aGCGCGGUcgaaagcgucuuGCCGGCcgUCGCGaaCGCGGCg -3'
miRNA:   3'- -CGUGCCG------------UGGCUGa-AGCGC--GCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 8650 0.74 0.17847
Target:  5'- gGCGCGGCGcCCGGCUU-GCuCGUGACg -3'
miRNA:   3'- -CGUGCCGU-GGCUGAAgCGcGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 36825 0.74 0.181826
Target:  5'- aGCGCGGCAaggugaCGACgaaccgcgccgccuUcaUCGCGCGCGACc -3'
miRNA:   3'- -CGUGCCGUg-----GCUG--------------A--AGCGCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 27670 0.74 0.183281
Target:  5'- gGCGCGGCggcgGCCGGCagCGguUGCGCGGCa -3'
miRNA:   3'- -CGUGCCG----UGGCUGaaGC--GCGCGCUGa -5'
16994 5' -58.2 NC_004333.2 + 30402 0.74 0.183281
Target:  5'- aGCGacCGGCGCCGGaccgaaUUCGCGCgccguaGCGACUg -3'
miRNA:   3'- -CGU--GCCGUGGCUg-----AAGCGCG------CGCUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.