miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 27406 0.68 0.400858
Target:  5'- gCGCAgGCGUgucgacGUUCAGGcGCgcaGCCGCg -3'
miRNA:   3'- -GCGU-CGCG------UAAGUCC-CGaugCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 41600 0.68 0.399947
Target:  5'- gGCGGCGaug-C-GGGCUuucgcgcguacgcGCGCCGCUa -3'
miRNA:   3'- gCGUCGCguaaGuCCCGA-------------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 27734 0.68 0.391809
Target:  5'- -cCGGCGCA-----GGCUucGCGCCGCCg -3'
miRNA:   3'- gcGUCGCGUaagucCCGA--UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 41316 0.68 0.391809
Target:  5'- gGCuGCGCAaugCAGuGCgcaGCCGCCg -3'
miRNA:   3'- gCGuCGCGUaa-GUCcCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 46942 0.68 0.391809
Target:  5'- uCGC-GCGCAgcCAaGGCgGCGCgCGCCg -3'
miRNA:   3'- -GCGuCGCGUaaGUcCCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 18798 0.68 0.382893
Target:  5'- gCGCuuaucGCGCGgccgCAGGGCgcgUGCUGCUa -3'
miRNA:   3'- -GCGu----CGCGUaa--GUCCCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 6653 0.68 0.382893
Target:  5'- gGCAGCGCGcUCGGcgcgcucgagcaGGCgcgcaucCGCCGCUu -3'
miRNA:   3'- gCGUCGCGUaAGUC------------CCGau-----GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 12096 0.68 0.382893
Target:  5'- gCGCAGCGCcgcgUCAcGGGCcagcuCGUCGUa -3'
miRNA:   3'- -GCGUCGCGua--AGU-CCCGau---GCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 27934 0.68 0.382893
Target:  5'- uGCGGCGCGaugUAGGccagucGCggucgauCGCCGCCa -3'
miRNA:   3'- gCGUCGCGUaa-GUCC------CGau-----GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 28210 0.68 0.380245
Target:  5'- cCGaCAGCGCGcagUCGGgcaaagcacucgacGGCggcuCGCCGCCc -3'
miRNA:   3'- -GC-GUCGCGUa--AGUC--------------CCGau--GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9557 0.68 0.374113
Target:  5'- uGCGGCGCcgaUCGuGGCgaguucguUGCCGCCa -3'
miRNA:   3'- gCGUCGCGua-AGUcCCGau------GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17191 0.68 0.365471
Target:  5'- aGCAGCccGCAacagCAGGGCUuuauggagucgcGCuugacgGCCGCCg -3'
miRNA:   3'- gCGUCG--CGUaa--GUCCCGA------------UG------CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 44953 0.68 0.365471
Target:  5'- uGCccGGCGUcaUCGGGGCgggcgGCG-CGCCg -3'
miRNA:   3'- gCG--UCGCGuaAGUCCCGa----UGCgGCGG- -5'
16996 5' -58.3 NC_004333.2 + 441 0.69 0.356968
Target:  5'- gGCAGUGCGgaacgcaaucUUCAcGGCguuugUGCCGCCg -3'
miRNA:   3'- gCGUCGCGU----------AAGUcCCGau---GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9002 0.69 0.356968
Target:  5'- uGCAGCGCGcgcagCAcGGGCggcaggAUGUCGUCg -3'
miRNA:   3'- gCGUCGCGUaa---GU-CCCGa-----UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 30926 0.69 0.356968
Target:  5'- uGCAGCGCGUccUCAugcgcGGGC-AgGCCGgCu -3'
miRNA:   3'- gCGUCGCGUA--AGU-----CCCGaUgCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 15807 0.69 0.356968
Target:  5'- aCGCGGCGCugaacgUCGu-GCUGCGCaCGCUa -3'
miRNA:   3'- -GCGUCGCGua----AGUccCGAUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 29952 0.69 0.348604
Target:  5'- gCGCgaaaAGCGCGUgccgagCGcGGCcGCGCUGCCa -3'
miRNA:   3'- -GCG----UCGCGUAa-----GUcCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 11887 0.69 0.348604
Target:  5'- gGCGGCGCGUaucgCAuGGCgcaggACGUCGCg -3'
miRNA:   3'- gCGUCGCGUAa---GUcCCGa----UGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 22486 0.69 0.331499
Target:  5'- uCGCGG-GCGUUCA-GGCUGaucagguCGCCGCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcCCGAU-------GCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.