miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 20473 0.66 0.477776
Target:  5'- aCGCAGCcgguuaGCGUccCGGcGGCUGCcgcgcaaccGCUGCCg -3'
miRNA:   3'- -GCGUCG------CGUAa-GUC-CCGAUG---------CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 32097 0.66 0.477776
Target:  5'- gCGuCGGCGCGUUCAGugacGGCaguuccgACGCgauaagCGCCa -3'
miRNA:   3'- -GC-GUCGCGUAAGUC----CCGa------UGCG------GCGG- -5'
16996 5' -58.3 NC_004333.2 + 17506 0.67 0.467752
Target:  5'- gGCGGCGCGaacggcUUCaugaAGGuGCUcgagcaGCGCaCGCCg -3'
miRNA:   3'- gCGUCGCGU------AAG----UCC-CGA------UGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 47366 0.67 0.467752
Target:  5'- uGCAGC-UGUUCGGucCUGCGCCGgCg -3'
miRNA:   3'- gCGUCGcGUAAGUCccGAUGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 17409 0.67 0.467752
Target:  5'- gCGCAGCGCggUCAcgacGcGCUgacgaucaaaACGUCGCCc -3'
miRNA:   3'- -GCGUCGCGuaAGUc---C-CGA----------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 37171 0.67 0.457837
Target:  5'- cCGCAGCGC------GGCgacACGCCGCUc -3'
miRNA:   3'- -GCGUCGCGuaagucCCGa--UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 19793 0.67 0.457837
Target:  5'- uGCcGCGCGUUgAGuGCgaUGCGCUGCUg -3'
miRNA:   3'- gCGuCGCGUAAgUCcCG--AUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9417 0.67 0.457837
Target:  5'- uCGCuGCcCug-C-GGGCUGCGCaCGCCg -3'
miRNA:   3'- -GCGuCGcGuaaGuCCCGAUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 24231 0.67 0.448036
Target:  5'- -aCGGCGCuugccccCAGGGCUuccacggugUGCCGCCc -3'
miRNA:   3'- gcGUCGCGuaa----GUCCCGAu--------GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 820 0.67 0.438353
Target:  5'- gGCGGCGUGUU---GGCUGCuuCCGCCu -3'
miRNA:   3'- gCGUCGCGUAAgucCCGAUGc-GGCGG- -5'
16996 5' -58.3 NC_004333.2 + 25941 0.67 0.438353
Target:  5'- gCGCGGCGCGaugcCGGcGGCcagUACGCgGCg -3'
miRNA:   3'- -GCGUCGCGUaa--GUC-CCG---AUGCGgCGg -5'
16996 5' -58.3 NC_004333.2 + 23192 0.67 0.42879
Target:  5'- gGCGGCGCGgacgCAGacGUUGCGCuCGCg -3'
miRNA:   3'- gCGUCGCGUaa--GUCc-CGAUGCG-GCGg -5'
16996 5' -58.3 NC_004333.2 + 25284 0.67 0.42879
Target:  5'- -uCAGCGUGUUCGgcgucgcaaccGGGCcgACGCCGgCg -3'
miRNA:   3'- gcGUCGCGUAAGU-----------CCCGa-UGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 43973 0.67 0.42879
Target:  5'- gCGCAGCuGCAaaucCAGGcGCagaagcacACGCCGCUg -3'
miRNA:   3'- -GCGUCG-CGUaa--GUCC-CGa-------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 14768 0.67 0.419351
Target:  5'- -uCGGCGCg--CAGucGCUGCGCCGCa -3'
miRNA:   3'- gcGUCGCGuaaGUCc-CGAUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 17007 0.67 0.419351
Target:  5'- gGC-GCGCcgUCuGGGCgGCGauGCCa -3'
miRNA:   3'- gCGuCGCGuaAGuCCCGaUGCggCGG- -5'
16996 5' -58.3 NC_004333.2 + 41209 0.68 0.41004
Target:  5'- uCGU-GCGCG---AGGGCUACcuGUCGCCg -3'
miRNA:   3'- -GCGuCGCGUaagUCCCGAUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 46795 0.68 0.41004
Target:  5'- gCGCGGCuucauGCGUUCGuucaaGGC--CGCCGCCg -3'
miRNA:   3'- -GCGUCG-----CGUAAGUc----CCGauGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15484 0.68 0.41004
Target:  5'- uGCcgAGCGCAa-CAGGGCUGCucGCgGCg -3'
miRNA:   3'- gCG--UCGCGUaaGUCCCGAUG--CGgCGg -5'
16996 5' -58.3 NC_004333.2 + 27406 0.68 0.400858
Target:  5'- gCGCAgGCGUgucgacGUUCAGGcGCgcaGCCGCg -3'
miRNA:   3'- -GCGU-CGCG------UAAGUCC-CGaugCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.