miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 20568 0.68 0.400858
Target:  5'- uCGuCGGCGCG-UC-GGGUcGCGCCGUg -3'
miRNA:   3'- -GC-GUCGCGUaAGuCCCGaUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 30634 0.72 0.233944
Target:  5'- aGCAGCGCGgcaAGGcGCggcgUGCGCUGCUc -3'
miRNA:   3'- gCGUCGCGUaagUCC-CG----AUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 44392 0.66 0.502251
Target:  5'- gGCGGCGCGUgcgCGguacaacggccugccGGGCU-CGCUGgCu -3'
miRNA:   3'- gCGUCGCGUAa--GU---------------CCCGAuGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 37171 0.67 0.457837
Target:  5'- cCGCAGCGC------GGCgacACGCCGCUc -3'
miRNA:   3'- -GCGUCGCGuaagucCCGa--UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 6653 0.68 0.382893
Target:  5'- gGCAGCGCGcUCGGcgcgcucgagcaGGCgcgcaucCGCCGCUu -3'
miRNA:   3'- gCGUCGCGUaAGUC------------CCGau-----GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 11907 0.72 0.233944
Target:  5'- uCGCGGCccgGCAUgcgCAGcGGC-GCGCgCGCCa -3'
miRNA:   3'- -GCGUCG---CGUAa--GUC-CCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 19793 0.67 0.457837
Target:  5'- uGCcGCGCGUUgAGuGCgaUGCGCUGCUg -3'
miRNA:   3'- gCGuCGCGUAAgUCcCG--AUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15288 0.72 0.205244
Target:  5'- gGCGGCGCggUCAgcaucagcaccGGGCgcuUGCCGUCg -3'
miRNA:   3'- gCGUCGCGuaAGU-----------CCCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 8305 0.78 0.089931
Target:  5'- gGCGGCGCg--CGGGGCUcGCGCC-CCg -3'
miRNA:   3'- gCGUCGCGuaaGUCCCGA-UGCGGcGG- -5'
16996 5' -58.3 NC_004333.2 + 47593 0.7 0.308907
Target:  5'- cCGCAG-GCGUUCAuucaGCUGCGCguCGCCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcc--CGAUGCG--GCGG- -5'
16996 5' -58.3 NC_004333.2 + 46942 0.68 0.391809
Target:  5'- uCGC-GCGCAgcCAaGGCgGCGCgCGCCg -3'
miRNA:   3'- -GCGuCGCGUaaGUcCCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 25941 0.67 0.438353
Target:  5'- gCGCGGCGCGaugcCGGcGGCcagUACGCgGCg -3'
miRNA:   3'- -GCGUCGCGUaa--GUC-CCG---AUGCGgCGg -5'
16996 5' -58.3 NC_004333.2 + 441 0.69 0.356968
Target:  5'- gGCAGUGCGgaacgcaaucUUCAcGGCguuugUGCCGCCg -3'
miRNA:   3'- gCGUCGCGU----------AAGUcCCGau---GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 3022 0.69 0.315791
Target:  5'- aCGUAGCGCGcgaacUUCAGaucguacGGCaGCugGCCGCCg -3'
miRNA:   3'- -GCGUCGCGU-----AAGUC-------CCGaUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 22190 0.71 0.259271
Target:  5'- gGCGGCG-GUUCGGcGGCUGCgGCCuGCUc -3'
miRNA:   3'- gCGUCGCgUAAGUC-CCGAUG-CGG-CGG- -5'
16996 5' -58.3 NC_004333.2 + 544 0.71 0.240074
Target:  5'- aCGUAGCcuuGCAcgUUCAGGGC-GCGCagGCCu -3'
miRNA:   3'- -GCGUCG---CGU--AAGUCCCGaUGCGg-CGG- -5'
16996 5' -58.3 NC_004333.2 + 38373 0.66 0.518869
Target:  5'- gCGCuGuCGCGUgUCGGGuGCgccggcgugACGCCgGCCa -3'
miRNA:   3'- -GCGuC-GCGUA-AGUCC-CGa--------UGCGG-CGG- -5'
16996 5' -58.3 NC_004333.2 + 6472 0.66 0.508456
Target:  5'- aGCAgGCGCA-UCAGGuCUAggcaGUCGCCc -3'
miRNA:   3'- gCGU-CGCGUaAGUCCcGAUg---CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 47886 0.66 0.486887
Target:  5'- gGCAGCcuucGCAUUCgcacggcGGGGCUcuacuACGUgGCUg -3'
miRNA:   3'- gCGUCG----CGUAAG-------UCCCGA-----UGCGgCGG- -5'
16996 5' -58.3 NC_004333.2 + 17409 0.67 0.467752
Target:  5'- gCGCAGCGCggUCAcgacGcGCUgacgaucaaaACGUCGCCc -3'
miRNA:   3'- -GCGUCGCGuaAGUc---C-CGA----------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.