Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16996 | 5' | -58.3 | NC_004333.2 | + | 8305 | 0.78 | 0.089931 |
Target: 5'- gGCGGCGCg--CGGGGCUcGCGCC-CCg -3' miRNA: 3'- gCGUCGCGuaaGUCCCGA-UGCGGcGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 6653 | 0.68 | 0.382893 |
Target: 5'- gGCAGCGCGcUCGGcgcgcucgagcaGGCgcgcaucCGCCGCUu -3' miRNA: 3'- gCGUCGCGUaAGUC------------CCGau-----GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 20568 | 0.68 | 0.400858 |
Target: 5'- uCGuCGGCGCG-UC-GGGUcGCGCCGUg -3' miRNA: 3'- -GC-GUCGCGUaAGuCCCGaUGCGGCGg -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 23522 | 0.66 | 0.529365 |
Target: 5'- aGCAccGCGCcUUUcGGGUa--GCCGCCg -3' miRNA: 3'- gCGU--CGCGuAAGuCCCGaugCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 544 | 0.71 | 0.240074 |
Target: 5'- aCGUAGCcuuGCAcgUUCAGGGC-GCGCagGCCu -3' miRNA: 3'- -GCGUCG---CGU--AAGUCCCGaUGCGg-CGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 22935 | 0.71 | 0.240074 |
Target: 5'- uGCAGCGUAUaggucgaaccuUCGGcaaGCUGuuCGCCGCCg -3' miRNA: 3'- gCGUCGCGUA-----------AGUCc--CGAU--GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 22190 | 0.71 | 0.259271 |
Target: 5'- gGCGGCG-GUUCGGcGGCUGCgGCCuGCUc -3' miRNA: 3'- gCGUCGCgUAAGUC-CCGAUG-CGG-CGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 26100 | 0.71 | 0.272753 |
Target: 5'- gGCAG-GCGacUUCGGGGUa--GCCGCCc -3' miRNA: 3'- gCGUCgCGU--AAGUCCCGaugCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 3022 | 0.69 | 0.315791 |
Target: 5'- aCGUAGCGCGcgaacUUCAGaucguacGGCaGCugGCCGCCg -3' miRNA: 3'- -GCGUCGCGU-----AAGUC-------CCGaUG--CGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 18798 | 0.68 | 0.382893 |
Target: 5'- gCGCuuaucGCGCGgccgCAGGGCgcgUGCUGCUa -3' miRNA: 3'- -GCGu----CGCGUaa--GUCCCGau-GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 29952 | 0.69 | 0.348604 |
Target: 5'- gCGCgaaaAGCGCGUgccgagCGcGGCcGCGCUGCCa -3' miRNA: 3'- -GCG----UCGCGUAa-----GUcCCGaUGCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 47593 | 0.7 | 0.308907 |
Target: 5'- cCGCAG-GCGUUCAuucaGCUGCGCguCGCCg -3' miRNA: 3'- -GCGUCgCGUAAGUcc--CGAUGCG--GCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 15288 | 0.72 | 0.205244 |
Target: 5'- gGCGGCGCggUCAgcaucagcaccGGGCgcuUGCCGUCg -3' miRNA: 3'- gCGUCGCGuaAGU-----------CCCGau-GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 441 | 0.69 | 0.356968 |
Target: 5'- gGCAGUGCGgaacgcaaucUUCAcGGCguuugUGCCGCCg -3' miRNA: 3'- gCGUCGCGU----------AAGUcCCGau---GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 11907 | 0.72 | 0.233944 |
Target: 5'- uCGCGGCccgGCAUgcgCAGcGGC-GCGCgCGCCa -3' miRNA: 3'- -GCGUCG---CGUAa--GUC-CCGaUGCG-GCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 5122 | 0.7 | 0.294022 |
Target: 5'- gCGCAGCaCAUugucguccgUCAcGGGCga-GCCGCCc -3' miRNA: 3'- -GCGUCGcGUA---------AGU-CCCGaugCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 9557 | 0.68 | 0.374113 |
Target: 5'- uGCGGCGCcgaUCGuGGCgaguucguUGCCGCCa -3' miRNA: 3'- gCGUCGCGua-AGUcCCGau------GCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 46942 | 0.68 | 0.391809 |
Target: 5'- uCGC-GCGCAgcCAaGGCgGCGCgCGCCg -3' miRNA: 3'- -GCGuCGCGUaaGUcCCGaUGCG-GCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 30634 | 0.72 | 0.233944 |
Target: 5'- aGCAGCGCGgcaAGGcGCggcgUGCGCUGCUc -3' miRNA: 3'- gCGUCGCGUaagUCC-CG----AUGCGGCGG- -5' |
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16996 | 5' | -58.3 | NC_004333.2 | + | 29362 | 0.71 | 0.246338 |
Target: 5'- uCGCAcGCGCAcUUCaAGcGGCU-CGUCGCCc -3' miRNA: 3'- -GCGU-CGCGU-AAG-UC-CCGAuGCGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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