miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 46532 1.12 0.000241
Target:  5'- gCGCAGCGCAUUCAGGGCUACGCCGCCg -3'
miRNA:   3'- -GCGUCGCGUAAGUCCCGAUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 45793 0.87 0.018773
Target:  5'- cCGcCGGCGCcgUCAuGGGCUACGCCGCg -3'
miRNA:   3'- -GC-GUCGCGuaAGU-CCCGAUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 7441 0.78 0.078018
Target:  5'- aGCAuCGCGUUCAGGaGCgacuUGCCGCCg -3'
miRNA:   3'- gCGUcGCGUAAGUCC-CGau--GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 35804 0.78 0.08259
Target:  5'- gCGgGGCGCGggCGGGcGCUACGgCGCCc -3'
miRNA:   3'- -GCgUCGCGUaaGUCC-CGAUGCgGCGG- -5'
16996 5' -58.3 NC_004333.2 + 8305 0.78 0.089931
Target:  5'- gGCGGCGCg--CGGGGCUcGCGCC-CCg -3'
miRNA:   3'- gCGUCGCGuaaGUCCCGA-UGCGGcGG- -5'
16996 5' -58.3 NC_004333.2 + 20502 0.76 0.112331
Target:  5'- uGCAGCGCGUUCAGGuGCgcgacuCGCaggugucaauguuCGCCg -3'
miRNA:   3'- gCGUCGCGUAAGUCC-CGau----GCG-------------GCGG- -5'
16996 5' -58.3 NC_004333.2 + 45228 0.74 0.152693
Target:  5'- aCGCucGCGCAgcugCAGGGCUACaGCgGCa -3'
miRNA:   3'- -GCGu-CGCGUaa--GUCCCGAUG-CGgCGg -5'
16996 5' -58.3 NC_004333.2 + 8489 0.73 0.174875
Target:  5'- aGUGGCGCAggCAGGccgaccaggaaGC-GCGCCGCCu -3'
miRNA:   3'- gCGUCGCGUaaGUCC-----------CGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 47253 0.73 0.174875
Target:  5'- gCGCGGCGCAcgCuacgAGGGCgcaAUGCCGaCCa -3'
miRNA:   3'- -GCGUCGCGUaaG----UCCCGa--UGCGGC-GG- -5'
16996 5' -58.3 NC_004333.2 + 41850 0.73 0.189526
Target:  5'- gCGCGGUGCGgucguccUCAcGGCUGCGCaGCCu -3'
miRNA:   3'- -GCGUCGCGUa------AGUcCCGAUGCGgCGG- -5'
16996 5' -58.3 NC_004333.2 + 27288 0.72 0.205244
Target:  5'- aGCAcGCGCugcgCcGGGCUcguCGCCGCCc -3'
miRNA:   3'- gCGU-CGCGuaa-GuCCCGAu--GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15288 0.72 0.205244
Target:  5'- gGCGGCGCggUCAgcaucagcaccGGGCgcuUGCCGUCg -3'
miRNA:   3'- gCGUCGCGuaAGU-----------CCCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 30629 0.72 0.210729
Target:  5'- uGCAGCGC-UUCGGGGaugUGCGCgauCGCUu -3'
miRNA:   3'- gCGUCGCGuAAGUCCCg--AUGCG---GCGG- -5'
16996 5' -58.3 NC_004333.2 + 39859 0.72 0.21634
Target:  5'- gCGUAaCGCAUagCGGGGCgcgagccccgcGCGCCGCCu -3'
miRNA:   3'- -GCGUcGCGUAa-GUCCCGa----------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 27667 0.72 0.226762
Target:  5'- aGCGGCGCGgcggcggccggCAGcGGUUGCgcggcaGCCGCCg -3'
miRNA:   3'- gCGUCGCGUaa---------GUC-CCGAUG------CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 30634 0.72 0.233944
Target:  5'- aGCAGCGCGgcaAGGcGCggcgUGCGCUGCUc -3'
miRNA:   3'- gCGUCGCGUaagUCC-CG----AUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 11907 0.72 0.233944
Target:  5'- uCGCGGCccgGCAUgcgCAGcGGC-GCGCgCGCCa -3'
miRNA:   3'- -GCGUCG---CGUAa--GUC-CCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 544 0.71 0.240074
Target:  5'- aCGUAGCcuuGCAcgUUCAGGGC-GCGCagGCCu -3'
miRNA:   3'- -GCGUCG---CGU--AAGUCCCGaUGCGg-CGG- -5'
16996 5' -58.3 NC_004333.2 + 22935 0.71 0.240074
Target:  5'- uGCAGCGUAUaggucgaaccuUCGGcaaGCUGuuCGCCGCCg -3'
miRNA:   3'- gCGUCGCGUA-----------AGUCc--CGAU--GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 29362 0.71 0.246338
Target:  5'- uCGCAcGCGCAcUUCaAGcGGCU-CGUCGCCc -3'
miRNA:   3'- -GCGU-CGCGU-AAG-UC-CCGAuGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.