miRNA display CGI


Results 21 - 40 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 3122 0.71 0.252736
Target:  5'- gCGCGGcCGCgcgguGUUCAGcGUUugcGCGCCGCCa -3'
miRNA:   3'- -GCGUC-GCG-----UAAGUCcCGA---UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 41577 0.71 0.252736
Target:  5'- uGCGGCGCu----GGGCggcGCGCCGUg -3'
miRNA:   3'- gCGUCGCGuaaguCCCGa--UGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 690 0.71 0.252736
Target:  5'- gGcCGGCGCcucGUUCAGcgcGGCaguCGCCGCCg -3'
miRNA:   3'- gC-GUCGCG---UAAGUC---CCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 22190 0.71 0.259271
Target:  5'- gGCGGCG-GUUCGGcGGCUGCgGCCuGCUc -3'
miRNA:   3'- gCGUCGCgUAAGUC-CCGAUG-CGG-CGG- -5'
16996 5' -58.3 NC_004333.2 + 26100 0.71 0.272753
Target:  5'- gGCAG-GCGacUUCGGGGUa--GCCGCCc -3'
miRNA:   3'- gCGUCgCGU--AAGUCCCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 16782 0.7 0.291838
Target:  5'- aCGCGGCGCgcaagaaggaGUUCGaugagacgaaacgcGcGGCUGCGUCGCUc -3'
miRNA:   3'- -GCGUCGCG----------UAAGU--------------C-CCGAUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 5122 0.7 0.294022
Target:  5'- gCGCAGCaCAUugucguccgUCAcGGGCga-GCCGCCc -3'
miRNA:   3'- -GCGUCGcGUA---------AGU-CCCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 47593 0.7 0.308907
Target:  5'- cCGCAG-GCGUUCAuucaGCUGCGCguCGCCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcc--CGAUGCG--GCGG- -5'
16996 5' -58.3 NC_004333.2 + 3022 0.69 0.315791
Target:  5'- aCGUAGCGCGcgaacUUCAGaucguacGGCaGCugGCCGCCg -3'
miRNA:   3'- -GCGUCGCGU-----AAGUC-------CCGaUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 13880 0.69 0.316563
Target:  5'- gCGCcGCGCGaagUCGgccggcacGGGCUGCGCgGCg -3'
miRNA:   3'- -GCGuCGCGUa--AGU--------CCCGAUGCGgCGg -5'
16996 5' -58.3 NC_004333.2 + 17038 0.69 0.316563
Target:  5'- gGCGGCgauGCAUUCGccGGGCU-CGCgCGCg -3'
miRNA:   3'- gCGUCG---CGUAAGU--CCCGAuGCG-GCGg -5'
16996 5' -58.3 NC_004333.2 + 44171 0.69 0.316563
Target:  5'- uGguGCGCcUUCgAGGucacgcagcaGCUaaACGCCGCCa -3'
miRNA:   3'- gCguCGCGuAAG-UCC----------CGA--UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 8841 0.69 0.316563
Target:  5'- uGCGGUGCGUcgUAGaaGC-GCGCCGCCg -3'
miRNA:   3'- gCGUCGCGUAa-GUCc-CGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 22486 0.69 0.331499
Target:  5'- uCGCGG-GCGUUCA-GGCUGaucagguCGCCGCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcCCGAU-------GCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 11887 0.69 0.348604
Target:  5'- gGCGGCGCGUaucgCAuGGCgcaggACGUCGCg -3'
miRNA:   3'- gCGUCGCGUAa---GUcCCGa----UGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 29952 0.69 0.348604
Target:  5'- gCGCgaaaAGCGCGUgccgagCGcGGCcGCGCUGCCa -3'
miRNA:   3'- -GCG----UCGCGUAa-----GUcCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 30926 0.69 0.356968
Target:  5'- uGCAGCGCGUccUCAugcgcGGGC-AgGCCGgCu -3'
miRNA:   3'- gCGUCGCGUA--AGU-----CCCGaUgCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 15807 0.69 0.356968
Target:  5'- aCGCGGCGCugaacgUCGu-GCUGCGCaCGCUa -3'
miRNA:   3'- -GCGUCGCGua----AGUccCGAUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 441 0.69 0.356968
Target:  5'- gGCAGUGCGgaacgcaaucUUCAcGGCguuugUGCCGCCg -3'
miRNA:   3'- gCGUCGCGU----------AAGUcCCGau---GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9002 0.69 0.356968
Target:  5'- uGCAGCGCGcgcagCAcGGGCggcaggAUGUCGUCg -3'
miRNA:   3'- gCGUCGCGUaa---GU-CCCGa-----UGCGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.