miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 14768 0.67 0.419351
Target:  5'- -uCGGCGCg--CAGucGCUGCGCCGCa -3'
miRNA:   3'- gcGUCGCGuaaGUCc-CGAUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 15288 0.72 0.205244
Target:  5'- gGCGGCGCggUCAgcaucagcaccGGGCgcuUGCCGUCg -3'
miRNA:   3'- gCGUCGCGuaAGU-----------CCCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15435 0.66 0.508456
Target:  5'- gGCAGCGaccugcgcgugaCGUUCugcucgccGGCUAuCGCUGCCg -3'
miRNA:   3'- gCGUCGC------------GUAAGuc------CCGAU-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15484 0.68 0.41004
Target:  5'- uGCcgAGCGCAa-CAGGGCUGCucGCgGCg -3'
miRNA:   3'- gCG--UCGCGUaaGUCCCGAUG--CGgCGg -5'
16996 5' -58.3 NC_004333.2 + 15807 0.69 0.356968
Target:  5'- aCGCGGCGCugaacgUCGu-GCUGCGCaCGCUa -3'
miRNA:   3'- -GCGUCGCGua----AGUccCGAUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 16782 0.7 0.291838
Target:  5'- aCGCGGCGCgcaagaaggaGUUCGaugagacgaaacgcGcGGCUGCGUCGCUc -3'
miRNA:   3'- -GCGUCGCG----------UAAGU--------------C-CCGAUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17007 0.67 0.419351
Target:  5'- gGC-GCGCcgUCuGGGCgGCGauGCCa -3'
miRNA:   3'- gCGuCGCGuaAGuCCCGaUGCggCGG- -5'
16996 5' -58.3 NC_004333.2 + 17038 0.69 0.316563
Target:  5'- gGCGGCgauGCAUUCGccGGGCU-CGCgCGCg -3'
miRNA:   3'- gCGUCG---CGUAAGU--CCCGAuGCG-GCGg -5'
16996 5' -58.3 NC_004333.2 + 17191 0.68 0.365471
Target:  5'- aGCAGCccGCAacagCAGGGCUuuauggagucgcGCuugacgGCCGCCg -3'
miRNA:   3'- gCGUCG--CGUaa--GUCCCGA------------UG------CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17409 0.67 0.467752
Target:  5'- gCGCAGCGCggUCAcgacGcGCUgacgaucaaaACGUCGCCc -3'
miRNA:   3'- -GCGUCGCGuaAGUc---C-CGA----------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17506 0.67 0.467752
Target:  5'- gGCGGCGCGaacggcUUCaugaAGGuGCUcgagcaGCGCaCGCCg -3'
miRNA:   3'- gCGUCGCGU------AAG----UCC-CGA------UGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 17746 0.66 0.508456
Target:  5'- aCGUGGCGCGaggCAGucGCUACGgCGCg -3'
miRNA:   3'- -GCGUCGCGUaa-GUCc-CGAUGCgGCGg -5'
16996 5' -58.3 NC_004333.2 + 18798 0.68 0.382893
Target:  5'- gCGCuuaucGCGCGgccgCAGGGCgcgUGCUGCUa -3'
miRNA:   3'- -GCGu----CGCGUaa--GUCCCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 19793 0.67 0.457837
Target:  5'- uGCcGCGCGUUgAGuGCgaUGCGCUGCUg -3'
miRNA:   3'- gCGuCGCGUAAgUCcCG--AUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 20473 0.66 0.477776
Target:  5'- aCGCAGCcgguuaGCGUccCGGcGGCUGCcgcgcaaccGCUGCCg -3'
miRNA:   3'- -GCGUCG------CGUAa-GUC-CCGAUG---------CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 20502 0.76 0.112331
Target:  5'- uGCAGCGCGUUCAGGuGCgcgacuCGCaggugucaauguuCGCCg -3'
miRNA:   3'- gCGUCGCGUAAGUCC-CGau----GCG-------------GCGG- -5'
16996 5' -58.3 NC_004333.2 + 20568 0.68 0.400858
Target:  5'- uCGuCGGCGCG-UC-GGGUcGCGCCGUg -3'
miRNA:   3'- -GC-GUCGCGUaAGuCCCGaUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 21858 0.66 0.498133
Target:  5'- aCGCGGCGCGcgCuacaagcuGGuucGCUGCGCauaGCCc -3'
miRNA:   3'- -GCGUCGCGUaaGu-------CC---CGAUGCGg--CGG- -5'
16996 5' -58.3 NC_004333.2 + 22190 0.71 0.259271
Target:  5'- gGCGGCG-GUUCGGcGGCUGCgGCCuGCUc -3'
miRNA:   3'- gCGUCGCgUAAGUC-CCGAUG-CGG-CGG- -5'
16996 5' -58.3 NC_004333.2 + 22486 0.69 0.331499
Target:  5'- uCGCGG-GCGUUCA-GGCUGaucagguCGCCGCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcCCGAU-------GCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.