miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 441 0.69 0.356968
Target:  5'- gGCAGUGCGgaacgcaaucUUCAcGGCguuugUGCCGCCg -3'
miRNA:   3'- gCGUCGCGU----------AAGUcCCGau---GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 544 0.71 0.240074
Target:  5'- aCGUAGCcuuGCAcgUUCAGGGC-GCGCagGCCu -3'
miRNA:   3'- -GCGUCG---CGU--AAGUCCCGaUGCGg-CGG- -5'
16996 5' -58.3 NC_004333.2 + 690 0.71 0.252736
Target:  5'- gGcCGGCGCcucGUUCAGcgcGGCaguCGCCGCCg -3'
miRNA:   3'- gC-GUCGCG---UAAGUC---CCGau-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 820 0.67 0.438353
Target:  5'- gGCGGCGUGUU---GGCUGCuuCCGCCu -3'
miRNA:   3'- gCGUCGCGUAAgucCCGAUGc-GGCGG- -5'
16996 5' -58.3 NC_004333.2 + 3022 0.69 0.315791
Target:  5'- aCGUAGCGCGcgaacUUCAGaucguacGGCaGCugGCCGCCg -3'
miRNA:   3'- -GCGUCGCGU-----AAGUC-------CCGaUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 3122 0.71 0.252736
Target:  5'- gCGCGGcCGCgcgguGUUCAGcGUUugcGCGCCGCCa -3'
miRNA:   3'- -GCGUC-GCG-----UAAGUCcCGA---UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 5122 0.7 0.294022
Target:  5'- gCGCAGCaCAUugucguccgUCAcGGGCga-GCCGCCc -3'
miRNA:   3'- -GCGUCGcGUA---------AGU-CCCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 6472 0.66 0.508456
Target:  5'- aGCAgGCGCA-UCAGGuCUAggcaGUCGCCc -3'
miRNA:   3'- gCGU-CGCGUaAGUCCcGAUg---CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 6653 0.68 0.382893
Target:  5'- gGCAGCGCGcUCGGcgcgcucgagcaGGCgcgcaucCGCCGCUu -3'
miRNA:   3'- gCGUCGCGUaAGUC------------CCGau-----GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 7441 0.78 0.078018
Target:  5'- aGCAuCGCGUUCAGGaGCgacuUGCCGCCg -3'
miRNA:   3'- gCGUcGCGUAAGUCC-CGau--GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 8305 0.78 0.089931
Target:  5'- gGCGGCGCg--CGGGGCUcGCGCC-CCg -3'
miRNA:   3'- gCGUCGCGuaaGUCCCGA-UGCGGcGG- -5'
16996 5' -58.3 NC_004333.2 + 8489 0.73 0.174875
Target:  5'- aGUGGCGCAggCAGGccgaccaggaaGC-GCGCCGCCu -3'
miRNA:   3'- gCGUCGCGUaaGUCC-----------CGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 8841 0.69 0.316563
Target:  5'- uGCGGUGCGUcgUAGaaGC-GCGCCGCCg -3'
miRNA:   3'- gCGUCGCGUAa-GUCc-CGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9002 0.69 0.356968
Target:  5'- uGCAGCGCGcgcagCAcGGGCggcaggAUGUCGUCg -3'
miRNA:   3'- gCGUCGCGUaa---GU-CCCGa-----UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 9417 0.67 0.457837
Target:  5'- uCGCuGCcCug-C-GGGCUGCGCaCGCCg -3'
miRNA:   3'- -GCGuCGcGuaaGuCCCGAUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 9557 0.68 0.374113
Target:  5'- uGCGGCGCcgaUCGuGGCgaguucguUGCCGCCa -3'
miRNA:   3'- gCGUCGCGua-AGUcCCGau------GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 11887 0.69 0.348604
Target:  5'- gGCGGCGCGUaucgCAuGGCgcaggACGUCGCg -3'
miRNA:   3'- gCGUCGCGUAa---GUcCCGa----UGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 11907 0.72 0.233944
Target:  5'- uCGCGGCccgGCAUgcgCAGcGGC-GCGCgCGCCa -3'
miRNA:   3'- -GCGUCG---CGUAa--GUC-CCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 12096 0.68 0.382893
Target:  5'- gCGCAGCGCcgcgUCAcGGGCcagcuCGUCGUa -3'
miRNA:   3'- -GCGUCGCGua--AGU-CCCGau---GCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 13880 0.69 0.316563
Target:  5'- gCGCcGCGCGaagUCGgccggcacGGGCUGCGCgGCg -3'
miRNA:   3'- -GCGuCGCGUa--AGU--------CCCGAUGCGgCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.