miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 47886 0.66 0.486887
Target:  5'- gGCAGCcuucGCAUUCgcacggcGGGGCUcuacuACGUgGCUg -3'
miRNA:   3'- gCGUCG----CGUAAG-------UCCCGA-----UGCGgCGG- -5'
16996 5' -58.3 NC_004333.2 + 47593 0.7 0.308907
Target:  5'- cCGCAG-GCGUUCAuucaGCUGCGCguCGCCg -3'
miRNA:   3'- -GCGUCgCGUAAGUcc--CGAUGCG--GCGG- -5'
16996 5' -58.3 NC_004333.2 + 47366 0.67 0.467752
Target:  5'- uGCAGC-UGUUCGGucCUGCGCCGgCg -3'
miRNA:   3'- gCGUCGcGUAAGUCccGAUGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 47253 0.73 0.174875
Target:  5'- gCGCGGCGCAcgCuacgAGGGCgcaAUGCCGaCCa -3'
miRNA:   3'- -GCGUCGCGUaaG----UCCCGa--UGCGGC-GG- -5'
16996 5' -58.3 NC_004333.2 + 46942 0.68 0.391809
Target:  5'- uCGC-GCGCAgcCAaGGCgGCGCgCGCCg -3'
miRNA:   3'- -GCGuCGCGUaaGUcCCGaUGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 46795 0.68 0.41004
Target:  5'- gCGCGGCuucauGCGUUCGuucaaGGC--CGCCGCCg -3'
miRNA:   3'- -GCGUCG-----CGUAAGUc----CCGauGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 46532 1.12 0.000241
Target:  5'- gCGCAGCGCAUUCAGGGCUACGCCGCCg -3'
miRNA:   3'- -GCGUCGCGUAAGUCCCGAUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 45793 0.87 0.018773
Target:  5'- cCGcCGGCGCcgUCAuGGGCUACGCCGCg -3'
miRNA:   3'- -GC-GUCGCGuaAGU-CCCGAUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 45745 0.66 0.518869
Target:  5'- uCGCcGCGCcgUacCAaGGC-ACGCUGCCg -3'
miRNA:   3'- -GCGuCGCGuaA--GUcCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 45228 0.74 0.152693
Target:  5'- aCGCucGCGCAgcugCAGGGCUACaGCgGCa -3'
miRNA:   3'- -GCGu-CGCGUaa--GUCCCGAUG-CGgCGg -5'
16996 5' -58.3 NC_004333.2 + 44953 0.68 0.365471
Target:  5'- uGCccGGCGUcaUCGGGGCgggcgGCG-CGCCg -3'
miRNA:   3'- gCG--UCGCGuaAGUCCCGa----UGCgGCGG- -5'
16996 5' -58.3 NC_004333.2 + 44392 0.66 0.502251
Target:  5'- gGCGGCGCGUgcgCGguacaacggccugccGGGCU-CGCUGgCu -3'
miRNA:   3'- gCGUCGCGUAa--GU---------------CCCGAuGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 44171 0.69 0.316563
Target:  5'- uGguGCGCcUUCgAGGucacgcagcaGCUaaACGCCGCCa -3'
miRNA:   3'- gCguCGCGuAAG-UCC----------CGA--UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 43973 0.67 0.42879
Target:  5'- gCGCAGCuGCAaaucCAGGcGCagaagcacACGCCGCUg -3'
miRNA:   3'- -GCGUCG-CGUaa--GUCC-CGa-------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 41850 0.73 0.189526
Target:  5'- gCGCGGUGCGgucguccUCAcGGCUGCGCaGCCu -3'
miRNA:   3'- -GCGUCGCGUa------AGUcCCGAUGCGgCGG- -5'
16996 5' -58.3 NC_004333.2 + 41600 0.68 0.399947
Target:  5'- gGCGGCGaug-C-GGGCUuucgcgcguacgcGCGCCGCUa -3'
miRNA:   3'- gCGUCGCguaaGuCCCGA-------------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 41577 0.71 0.252736
Target:  5'- uGCGGCGCu----GGGCggcGCGCCGUg -3'
miRNA:   3'- gCGUCGCGuaaguCCCGa--UGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 41316 0.68 0.391809
Target:  5'- gGCuGCGCAaugCAGuGCgcaGCCGCCg -3'
miRNA:   3'- gCGuCGCGUaa-GUCcCGaugCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 41209 0.68 0.41004
Target:  5'- uCGU-GCGCG---AGGGCUACcuGUCGCCg -3'
miRNA:   3'- -GCGuCGCGUaagUCCCGAUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 39859 0.72 0.21634
Target:  5'- gCGUAaCGCAUagCGGGGCgcgagccccgcGCGCCGCCu -3'
miRNA:   3'- -GCGUcGCGUAa-GUCCCGa----------UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.