miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16996 5' -58.3 NC_004333.2 + 41600 0.68 0.399947
Target:  5'- gGCGGCGaug-C-GGGCUuucgcgcguacgcGCGCCGCUa -3'
miRNA:   3'- gCGUCGCguaaGuCCCGA-------------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17506 0.67 0.467752
Target:  5'- gGCGGCGCGaacggcUUCaugaAGGuGCUcgagcaGCGCaCGCCg -3'
miRNA:   3'- gCGUCGCGU------AAG----UCC-CGA------UGCG-GCGG- -5'
16996 5' -58.3 NC_004333.2 + 820 0.67 0.438353
Target:  5'- gGCGGCGUGUU---GGCUGCuuCCGCCu -3'
miRNA:   3'- gCGUCGCGUAAgucCCGAUGc-GGCGG- -5'
16996 5' -58.3 NC_004333.2 + 43973 0.67 0.42879
Target:  5'- gCGCAGCuGCAaaucCAGGcGCagaagcacACGCCGCUg -3'
miRNA:   3'- -GCGUCG-CGUaa--GUCC-CGa-------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 23192 0.67 0.42879
Target:  5'- gGCGGCGCGgacgCAGacGUUGCGCuCGCg -3'
miRNA:   3'- gCGUCGCGUaa--GUCc-CGAUGCG-GCGg -5'
16996 5' -58.3 NC_004333.2 + 17007 0.67 0.419351
Target:  5'- gGC-GCGCcgUCuGGGCgGCGauGCCa -3'
miRNA:   3'- gCGuCGCGuaAGuCCCGaUGCggCGG- -5'
16996 5' -58.3 NC_004333.2 + 14768 0.67 0.419351
Target:  5'- -uCGGCGCg--CAGucGCUGCGCCGCa -3'
miRNA:   3'- gcGUCGCGuaaGUCc-CGAUGCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 46795 0.68 0.41004
Target:  5'- gCGCGGCuucauGCGUUCGuucaaGGC--CGCCGCCg -3'
miRNA:   3'- -GCGUCG-----CGUAAGUc----CCGauGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 27406 0.68 0.400858
Target:  5'- gCGCAgGCGUgucgacGUUCAGGcGCgcaGCCGCg -3'
miRNA:   3'- -GCGU-CGCG------UAAGUCC-CGaugCGGCGg -5'
16996 5' -58.3 NC_004333.2 + 47366 0.67 0.467752
Target:  5'- uGCAGC-UGUUCGGucCUGCGCCGgCg -3'
miRNA:   3'- gCGUCGcGUAAGUCccGAUGCGGCgG- -5'
16996 5' -58.3 NC_004333.2 + 25162 0.66 0.477776
Target:  5'- gGCAGUGCAggC-GGGCgGCGuguuCCGCUu -3'
miRNA:   3'- gCGUCGCGUaaGuCCCGaUGC----GGCGG- -5'
16996 5' -58.3 NC_004333.2 + 38035 0.66 0.487904
Target:  5'- uCGCGGuCGCGaagUGGucGGCUAUGCCGaCCu -3'
miRNA:   3'- -GCGUC-GCGUaa-GUC--CCGAUGCGGC-GG- -5'
16996 5' -58.3 NC_004333.2 + 25403 0.66 0.528312
Target:  5'- uGCGGCGCAUcgaacgCAGucCUgaauacgACGUCGCCg -3'
miRNA:   3'- gCGUCGCGUAa-----GUCccGA-------UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 45745 0.66 0.518869
Target:  5'- uCGCcGCGCcgUacCAaGGC-ACGCUGCCg -3'
miRNA:   3'- -GCGuCGCGuaA--GUcCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 38541 0.66 0.518869
Target:  5'- aGCcgGGCGCA-----GGC-GCGCCGCCg -3'
miRNA:   3'- gCG--UCGCGUaagucCCGaUGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 15435 0.66 0.508456
Target:  5'- gGCAGCGaccugcgcgugaCGUUCugcucgccGGCUAuCGCUGCCg -3'
miRNA:   3'- gCGUCGC------------GUAAGuc------CCGAU-GCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 38436 0.66 0.508456
Target:  5'- gGC-GCGCAUcCGGcGCUcAUGUCGCCg -3'
miRNA:   3'- gCGuCGCGUAaGUCcCGA-UGCGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 27636 0.66 0.508456
Target:  5'- aGCGGCGCGgcCAu-GUUACagGCCGCCa -3'
miRNA:   3'- gCGUCGCGUaaGUccCGAUG--CGGCGG- -5'
16996 5' -58.3 NC_004333.2 + 17746 0.66 0.508456
Target:  5'- aCGUGGCGCGaggCAGucGCUACGgCGCg -3'
miRNA:   3'- -GCGUCGCGUaa-GUCc-CGAUGCgGCGg -5'
16996 5' -58.3 NC_004333.2 + 35874 0.66 0.498133
Target:  5'- gGCuGGCGCg--CAGGacgccgcaauGC-GCGCCGCCg -3'
miRNA:   3'- gCG-UCGCGuaaGUCC----------CGaUGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.