miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 48088 0.68 0.28738
Target:  5'- --cCGACGAGGCgcaggcggcaaccgGGCgCGCGcaccgCGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG--------------CCGgGCGCa----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 18475 0.68 0.289506
Target:  5'- --cCGGCAccggAGGCGuaCCCGcCGUUGCCGg -3'
miRNA:   3'- uuaGCUGU----UCCGCc-GGGC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 10799 0.68 0.289506
Target:  5'- --aCGAUGAGGaCGGCCgCGCGaCGCgGu -3'
miRNA:   3'- uuaGCUGUUCC-GCCGG-GCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 14312 0.68 0.296678
Target:  5'- uGUCGAUcAGcGCGGCaCCGU-UCGCCGc -3'
miRNA:   3'- uUAGCUGuUC-CGCCG-GGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 6557 0.68 0.299585
Target:  5'- cAGUUGAUAGcGGCGcgcguacgcgcgaaaGCCCGCaUCGCCGc -3'
miRNA:   3'- -UUAGCUGUU-CCGC---------------CGGGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36294 0.68 0.311434
Target:  5'- --aCGACAAGGUGcucgcGCCCGUuUCgGCCGa -3'
miRNA:   3'- uuaGCUGUUCCGC-----CGGGCGcAG-CGGC- -5'
16997 5' -60.5 NC_004333.2 + 169 0.68 0.319019
Target:  5'- cGAUCGGCGccuGGCGcgaguccacuGCCCGUGcgccCGCCGg -3'
miRNA:   3'- -UUAGCUGUu--CCGC----------CGGGCGCa---GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 15636 0.68 0.319019
Target:  5'- uGAUCGACGcGaGCGcGCCgCGCGaCGUCGg -3'
miRNA:   3'- -UUAGCUGUuC-CGC-CGG-GCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 19194 0.67 0.334602
Target:  5'- --cCGACccGGCGGCCgCGCaacugaUCGCCGc -3'
miRNA:   3'- uuaGCUGuuCCGCCGG-GCGc-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 45970 0.67 0.334602
Target:  5'- --gCGGCGAGGCguggugucccGGCCUGCcacucggCGCCGa -3'
miRNA:   3'- uuaGCUGUUCCG----------CCGGGCGca-----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 44956 0.67 0.3426
Target:  5'- --cCGGCGucaucgGGGCGGgCgGCG-CGCCGg -3'
miRNA:   3'- uuaGCUGU------UCCGCCgGgCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 41248 0.67 0.3426
Target:  5'- -uUCGACu-GGC-GCCCGCGcaCGCCu -3'
miRNA:   3'- uuAGCUGuuCCGcCGGGCGCa-GCGGc -5'
16997 5' -60.5 NC_004333.2 + 17877 0.67 0.3426
Target:  5'- uGUCGcaggcGCGAcGGCGGCCaGC-UCGCCGu -3'
miRNA:   3'- uUAGC-----UGUU-CCGCCGGgCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 26792 0.67 0.3426
Target:  5'- --cCGACGAGuaGGCgCGCuucGUUGCCGa -3'
miRNA:   3'- uuaGCUGUUCcgCCGgGCG---CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 23976 0.67 0.3426
Target:  5'- --gCGGCcAGGCGGCCgGUaccGUCGCa- -3'
miRNA:   3'- uuaGCUGuUCCGCCGGgCG---CAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 7380 0.67 0.350734
Target:  5'- cAUCGACGGGGCGaGCgacaugaCGCGU-GCCu -3'
miRNA:   3'- uUAGCUGUUCCGC-CGg------GCGCAgCGGc -5'
16997 5' -60.5 NC_004333.2 + 17704 0.67 0.350734
Target:  5'- -cUCGACAAGGUaGGCgcagCCGUGaCGUCGa -3'
miRNA:   3'- uuAGCUGUUCCG-CCG----GGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36073 0.67 0.350734
Target:  5'- --aCGACGAGcUGGCCCGUGaCGCgGc -3'
miRNA:   3'- uuaGCUGUUCcGCCGGGCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 38455 0.67 0.367412
Target:  5'- uGUCGcCGAcGCGGCguuucgcgaaCCGCGUgCGCCGa -3'
miRNA:   3'- uUAGCuGUUcCGCCG----------GGCGCA-GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 17024 0.66 0.384627
Target:  5'- --gCGAugcCAAGGCGGgCgGCGaugcauUCGCCGg -3'
miRNA:   3'- uuaGCU---GUUCCGCCgGgCGC------AGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.