miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 17704 0.67 0.350734
Target:  5'- -cUCGACAAGGUaGGCgcagCCGUGaCGUCGa -3'
miRNA:   3'- uuAGCUGUUCCG-CCG----GGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 17877 0.67 0.3426
Target:  5'- uGUCGcaggcGCGAcGGCGGCCaGC-UCGCCGu -3'
miRNA:   3'- uUAGC-----UGUU-CCGCCGGgCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 18475 0.68 0.289506
Target:  5'- --cCGGCAccggAGGCGuaCCCGcCGUUGCCGg -3'
miRNA:   3'- uuaGCUGU----UCCGCc-GGGC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 19194 0.67 0.334602
Target:  5'- --cCGACccGGCGGCCgCGCaacugaUCGCCGc -3'
miRNA:   3'- uuaGCUGuuCCGCCGG-GCGc-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 19425 0.66 0.41143
Target:  5'- cGGUCGACGcGGC-GCUCGCGcagUUGCUGg -3'
miRNA:   3'- -UUAGCUGUuCCGcCGGGCGC---AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 21723 0.69 0.243087
Target:  5'- cGAUCcACAAGGCGGCCagGuCGgcaCGCCGc -3'
miRNA:   3'- -UUAGcUGUUCCGCCGGg-C-GCa--GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 23927 0.66 0.384627
Target:  5'- -uUCGAC-GGGCGGCacaCCGUGgaaGCCu -3'
miRNA:   3'- uuAGCUGuUCCGCCG---GGCGCag-CGGc -5'
16997 5' -60.5 NC_004333.2 + 23976 0.67 0.3426
Target:  5'- --gCGGCcAGGCGGCCgGUaccGUCGCa- -3'
miRNA:   3'- uuaGCUGuUCCGCCGGgCG---CAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 24038 0.7 0.208381
Target:  5'- -cUCGugAAGGCGGCCgcgaacauUGCG-CGCUGc -3'
miRNA:   3'- uuAGCugUUCCGCCGG--------GCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 26792 0.67 0.3426
Target:  5'- --cCGACGAGuaGGCgCGCuucGUUGCCGa -3'
miRNA:   3'- uuaGCUGUUCcgCCGgGCG---CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 27415 0.73 0.143715
Target:  5'- uGUCGACGuucAGGCGcGCagCCGCGUCGgCGa -3'
miRNA:   3'- uUAGCUGU---UCCGC-CG--GGCGCAGCgGC- -5'
16997 5' -60.5 NC_004333.2 + 28236 0.68 0.280386
Target:  5'- -cUCGAC--GGCGGCUCGCcgcccggcgcgcucGUCGUCGa -3'
miRNA:   3'- uuAGCUGuuCCGCCGGGCG--------------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 30724 0.7 0.225167
Target:  5'- --cUGGCAAGcuCGGCCgugGCGUCGCCGa -3'
miRNA:   3'- uuaGCUGUUCc-GCCGGg--CGCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 32161 0.75 0.09259
Target:  5'- uGUCGGCAGGcCGGCCaCGCGcuuacUCGCCGa -3'
miRNA:   3'- uUAGCUGUUCcGCCGG-GCGC-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 33174 0.7 0.225167
Target:  5'- cGUCGGCGucGGCGGCCCGCuaa-CCGg -3'
miRNA:   3'- uUAGCUGUu-CCGCCGGGCGcagcGGC- -5'
16997 5' -60.5 NC_004333.2 + 33758 0.66 0.393432
Target:  5'- uGAUCGACu-GGCGGCgCGagaaacUCGCCu -3'
miRNA:   3'- -UUAGCUGuuCCGCCGgGCgc----AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 34233 0.7 0.2133
Target:  5'- aAGUCGcCAAGGCGGCCacgcugGCGgcagcggccacgaUCGCCa -3'
miRNA:   3'- -UUAGCuGUUCCGCCGGg-----CGC-------------AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 34337 0.7 0.231013
Target:  5'- -cUCGACGcGGC-GCCCGUcgucgaaccGUCGCCGu -3'
miRNA:   3'- uuAGCUGUuCCGcCGGGCG---------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36073 0.67 0.350734
Target:  5'- --aCGACGAGcUGGCCCGUGaCGCgGc -3'
miRNA:   3'- uuaGCUGUUCcGCCGGGCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 36294 0.68 0.311434
Target:  5'- --aCGACAAGGUGcucgcGCCCGUuUCgGCCGa -3'
miRNA:   3'- uuaGCUGUUCCGC-----CGGGCGcAG-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.