miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 169 0.68 0.319019
Target:  5'- cGAUCGGCGccuGGCGcgaguccacuGCCCGUGcgccCGCCGg -3'
miRNA:   3'- -UUAGCUGUu--CCGC----------CGGGCGCa---GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 2373 0.68 0.280386
Target:  5'- uGAUCGACGcGGCGuagcccaugacggcGCCgGCGgUCGCCu -3'
miRNA:   3'- -UUAGCUGUuCCGC--------------CGGgCGC-AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 2573 0.66 0.401468
Target:  5'- cGAUCGGCAaucacggccguccAGGCGGUCgUGaagGUCGCCc -3'
miRNA:   3'- -UUAGCUGU-------------UCCGCCGG-GCg--CAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 4786 0.84 0.019256
Target:  5'- -uUCGGCAGGGUGaGCCCGCGUCGCg- -3'
miRNA:   3'- uuAGCUGUUCCGC-CGGGCGCAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 5038 0.7 0.213853
Target:  5'- --gCGGCcAGGCGGCCgGCuGUUgGCCGa -3'
miRNA:   3'- uuaGCUGuUCCGCCGGgCG-CAG-CGGC- -5'
16997 5' -60.5 NC_004333.2 + 5187 0.66 0.384627
Target:  5'- cAUCGGuCGAGaGCGccGCCCGCucGUcCGCCGg -3'
miRNA:   3'- uUAGCU-GUUC-CGC--CGGGCG--CA-GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 6557 0.68 0.299585
Target:  5'- cAGUUGAUAGcGGCGcgcguacgcgcgaaaGCCCGCaUCGCCGc -3'
miRNA:   3'- -UUAGCUGUU-CCGC---------------CGGGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 7380 0.67 0.350734
Target:  5'- cAUCGACGGGGCGaGCgacaugaCGCGU-GCCu -3'
miRNA:   3'- uUAGCUGUUCCGC-CGg------GCGCAgCGGc -5'
16997 5' -60.5 NC_004333.2 + 7840 0.68 0.28247
Target:  5'- aGAUCGAC---GCGGCCUGCGcCgGCCa -3'
miRNA:   3'- -UUAGCUGuucCGCCGGGCGCaG-CGGc -5'
16997 5' -60.5 NC_004333.2 + 8974 0.66 0.393432
Target:  5'- --cCGACGGGagcGCGGgCCGUGcUGCCGg -3'
miRNA:   3'- uuaGCUGUUC---CGCCgGGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 9015 0.66 0.420619
Target:  5'- --gCGGCuugccAGGCGGCgCGC-UCGCUGc -3'
miRNA:   3'- uuaGCUGu----UCCGCCGgGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 9740 0.66 0.420619
Target:  5'- gGAUCGACAAaguucgacGCGGCaaGCGucucgaUCGCCGu -3'
miRNA:   3'- -UUAGCUGUUc-------CGCCGggCGC------AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 10259 0.69 0.268807
Target:  5'- --aCGACGcAGGCaGUuuGgCGUCGCCGa -3'
miRNA:   3'- uuaGCUGU-UCCGcCGggC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 10799 0.68 0.289506
Target:  5'- --aCGAUGAGGaCGGCCgCGCGaCGCgGu -3'
miRNA:   3'- uuaGCUGUUCC-GCCGG-GCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 12464 0.66 0.384627
Target:  5'- cGUCGGCc-GGCacGCCCGgGUCGUCa -3'
miRNA:   3'- uUAGCUGuuCCGc-CGGGCgCAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 14312 0.68 0.296678
Target:  5'- uGUCGAUcAGcGCGGCaCCGU-UCGCCGc -3'
miRNA:   3'- uUAGCUGuUC-CGCCG-GGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 15636 0.68 0.319019
Target:  5'- uGAUCGACGcGaGCGcGCCgCGCGaCGUCGg -3'
miRNA:   3'- -UUAGCUGUuC-CGC-CGG-GCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 16006 0.69 0.262178
Target:  5'- -cUCGGCGAguaagcgcguGGcCGGCCUGCcgacaGUCGCCGc -3'
miRNA:   3'- uuAGCUGUU----------CC-GCCGGGCG-----CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 16882 0.73 0.143715
Target:  5'- cGUCGGCGcaGGuGCGGCCgGUcUCGCCGg -3'
miRNA:   3'- uUAGCUGU--UC-CGCCGGgCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 17024 0.66 0.384627
Target:  5'- --gCGAugcCAAGGCGGgCgGCGaugcauUCGCCGg -3'
miRNA:   3'- uuaGCU---GUUCCGCCgGgCGC------AGCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.