miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 48088 0.68 0.28738
Target:  5'- --cCGACGAGGCgcaggcggcaaccgGGCgCGCGcaccgCGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG--------------CCGgGCGCa----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 46224 1.07 0.000386
Target:  5'- aAAUCGACAAGGCGGCCCGCGUCGCCGg -3'
miRNA:   3'- -UUAGCUGUUCCGCCGGGCGCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 45970 0.67 0.334602
Target:  5'- --gCGGCGAGGCguggugucccGGCCUGCcacucggCGCCGa -3'
miRNA:   3'- uuaGCUGUUCCG----------CCGGGCGca-----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 44956 0.67 0.3426
Target:  5'- --cCGGCGucaucgGGGCGGgCgGCG-CGCCGg -3'
miRNA:   3'- uuaGCUGU------UCCGCCgGgCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 44552 0.66 0.393432
Target:  5'- aGGUCGACugcuaCGGCCCGCaggCGCCc -3'
miRNA:   3'- -UUAGCUGuucc-GCCGGGCGca-GCGGc -5'
16997 5' -60.5 NC_004333.2 + 42102 0.66 0.41143
Target:  5'- --gCGACGAGGCgugucgcgaGGUgCGCcaGUUGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG---------CCGgGCG--CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 41740 0.73 0.128918
Target:  5'- aGAUCGGCGcGGGCGaCUCGCG-CGCCGg -3'
miRNA:   3'- -UUAGCUGU-UCCGCcGGGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 41248 0.67 0.3426
Target:  5'- -uUCGACu-GGC-GCCCGCGcaCGCCu -3'
miRNA:   3'- uuAGCUGuuCCGcCGGGCGCa-GCGGc -5'
16997 5' -60.5 NC_004333.2 + 39667 0.69 0.275571
Target:  5'- cGGUCGcCGAGGCGGCgCGCuuccugGUCgGCCu -3'
miRNA:   3'- -UUAGCuGUUCCGCCGgGCG------CAG-CGGc -5'
16997 5' -60.5 NC_004333.2 + 38455 0.67 0.367412
Target:  5'- uGUCGcCGAcGCGGCguuucgcgaaCCGCGUgCGCCGa -3'
miRNA:   3'- uUAGCuGUUcCGCCG----------GGCGCA-GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 38365 0.71 0.186212
Target:  5'- uGAUCGACGcgcugucgcgugucGGGUGcGCCgGCGUgaCGCCGg -3'
miRNA:   3'- -UUAGCUGU--------------UCCGC-CGGgCGCA--GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36294 0.68 0.311434
Target:  5'- --aCGACAAGGUGcucgcGCCCGUuUCgGCCGa -3'
miRNA:   3'- uuaGCUGUUCCGC-----CGGGCGcAG-CGGC- -5'
16997 5' -60.5 NC_004333.2 + 36073 0.67 0.350734
Target:  5'- --aCGACGAGcUGGCCCGUGaCGCgGc -3'
miRNA:   3'- uuaGCUGUUCcGCCGGGCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 34337 0.7 0.231013
Target:  5'- -cUCGACGcGGC-GCCCGUcgucgaaccGUCGCCGu -3'
miRNA:   3'- uuAGCUGUuCCGcCGGGCG---------CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 34233 0.7 0.2133
Target:  5'- aAGUCGcCAAGGCGGCCacgcugGCGgcagcggccacgaUCGCCa -3'
miRNA:   3'- -UUAGCuGUUCCGCCGGg-----CGC-------------AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 33758 0.66 0.393432
Target:  5'- uGAUCGACu-GGCGGCgCGagaaacUCGCCu -3'
miRNA:   3'- -UUAGCUGuuCCGCCGgGCgc----AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 33174 0.7 0.225167
Target:  5'- cGUCGGCGucGGCGGCCCGCuaa-CCGg -3'
miRNA:   3'- uUAGCUGUu-CCGCCGGGCGcagcGGC- -5'
16997 5' -60.5 NC_004333.2 + 32161 0.75 0.09259
Target:  5'- uGUCGGCAGGcCGGCCaCGCGcuuacUCGCCGa -3'
miRNA:   3'- uUAGCUGUUCcGCCGG-GCGC-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 30724 0.7 0.225167
Target:  5'- --cUGGCAAGcuCGGCCgugGCGUCGCCGa -3'
miRNA:   3'- uuaGCUGUUCc-GCCGGg--CGCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 28236 0.68 0.280386
Target:  5'- -cUCGAC--GGCGGCUCGCcgcccggcgcgcucGUCGUCGa -3'
miRNA:   3'- uuAGCUGuuCCGCCGGGCG--------------CAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.