miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16997 5' -60.5 NC_004333.2 + 4786 0.84 0.019256
Target:  5'- -uUCGGCAGGGUGaGCCCGCGUCGCg- -3'
miRNA:   3'- uuAGCUGUUCCGC-CGGGCGCAGCGgc -5'
16997 5' -60.5 NC_004333.2 + 12464 0.66 0.384627
Target:  5'- cGUCGGCc-GGCacGCCCGgGUCGUCa -3'
miRNA:   3'- uUAGCUGuuCCGc-CGGGCgCAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 42102 0.66 0.41143
Target:  5'- --gCGACGAGGCgugucgcgaGGUgCGCcaGUUGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG---------CCGgGCG--CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 9015 0.66 0.420619
Target:  5'- --gCGGCuugccAGGCGGCgCGC-UCGCUGc -3'
miRNA:   3'- uuaGCUGu----UCCGCCGgGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 5038 0.7 0.213853
Target:  5'- --gCGGCcAGGCGGCCgGCuGUUgGCCGa -3'
miRNA:   3'- uuaGCUGuUCCGCCGGgCG-CAG-CGGC- -5'
16997 5' -60.5 NC_004333.2 + 30724 0.7 0.225167
Target:  5'- --cUGGCAAGcuCGGCCgugGCGUCGCCGa -3'
miRNA:   3'- uuaGCUGUUCc-GCCGGg--CGCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 2373 0.68 0.280386
Target:  5'- uGAUCGACGcGGCGuagcccaugacggcGCCgGCGgUCGCCu -3'
miRNA:   3'- -UUAGCUGUuCCGC--------------CGGgCGC-AGCGGc -5'
16997 5' -60.5 NC_004333.2 + 7840 0.68 0.28247
Target:  5'- aGAUCGAC---GCGGCCUGCGcCgGCCa -3'
miRNA:   3'- -UUAGCUGuucCGCCGGGCGCaG-CGGc -5'
16997 5' -60.5 NC_004333.2 + 14312 0.68 0.296678
Target:  5'- uGUCGAUcAGcGCGGCaCCGU-UCGCCGc -3'
miRNA:   3'- uUAGCUGuUC-CGCCG-GGCGcAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 36073 0.67 0.350734
Target:  5'- --aCGACGAGcUGGCCCGUGaCGCgGc -3'
miRNA:   3'- uuaGCUGUUCcGCCGGGCGCaGCGgC- -5'
16997 5' -60.5 NC_004333.2 + 169 0.68 0.319019
Target:  5'- cGAUCGGCGccuGGCGcgaguccacuGCCCGUGcgccCGCCGg -3'
miRNA:   3'- -UUAGCUGUu--CCGC----------CGGGCGCa---GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 18475 0.68 0.289506
Target:  5'- --cCGGCAccggAGGCGuaCCCGcCGUUGCCGg -3'
miRNA:   3'- uuaGCUGU----UCCGCc-GGGC-GCAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 32161 0.75 0.09259
Target:  5'- uGUCGGCAGGcCGGCCaCGCGcuuacUCGCCGa -3'
miRNA:   3'- uUAGCUGUUCcGCCGG-GCGC-----AGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 45970 0.67 0.334602
Target:  5'- --gCGGCGAGGCguggugucccGGCCUGCcacucggCGCCGa -3'
miRNA:   3'- uuaGCUGUUCCG----------CCGGGCGca-----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 41740 0.73 0.128918
Target:  5'- aGAUCGGCGcGGGCGaCUCGCG-CGCCGg -3'
miRNA:   3'- -UUAGCUGU-UCCGCcGGGCGCaGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 48088 0.68 0.28738
Target:  5'- --cCGACGAGGCgcaggcggcaaccgGGCgCGCGcaccgCGCCGg -3'
miRNA:   3'- uuaGCUGUUCCG--------------CCGgGCGCa----GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 26792 0.67 0.3426
Target:  5'- --cCGACGAGuaGGCgCGCuucGUUGCCGa -3'
miRNA:   3'- uuaGCUGUUCcgCCGgGCG---CAGCGGC- -5'
16997 5' -60.5 NC_004333.2 + 2573 0.66 0.401468
Target:  5'- cGAUCGGCAaucacggccguccAGGCGGUCgUGaagGUCGCCc -3'
miRNA:   3'- -UUAGCUGU-------------UCCGCCGG-GCg--CAGCGGc -5'
16997 5' -60.5 NC_004333.2 + 38365 0.71 0.186212
Target:  5'- uGAUCGACGcgcugucgcgugucGGGUGcGCCgGCGUgaCGCCGg -3'
miRNA:   3'- -UUAGCUGU--------------UCCGC-CGGgCGCA--GCGGC- -5'
16997 5' -60.5 NC_004333.2 + 39667 0.69 0.275571
Target:  5'- cGGUCGcCGAGGCGGCgCGCuuccugGUCgGCCu -3'
miRNA:   3'- -UUAGCuGUUCCGCCGgGCG------CAG-CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.